View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_52 (Length: 279)
Name: NF12943_low_52
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 3093499 - 3093263
Alignment:
| Q |
20 |
gttcatttgataatcacaaggaagagagctttattcggagataacttcatcgtcaaagatgtcaacaacaaggttgtgttcacagttaaaagtactgtag |
119 |
Q |
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| T |
3093499 |
gttcatttgataatcacaaggaagagagctttatttggagataacttcatcgtcaaagatgtcaacaacaaggttgtgttcacagttaaaagtactgtag |
3093400 |
T |
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| Q |
120 |
ccatcataaaaccctgtcagaatcggttcttatttgatgctaatggaaactgcattttccatcttcgaaaatcggtttgctcatcaactatattcaagat |
219 |
Q |
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| T |
3093399 |
ccatcataaaaccctgtcagaatcggttcttatttgatgctaatggaaactgcattctccatcttcgaaaatcggtttgctcatcaactatattcaagat |
3093300 |
T |
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| Q |
220 |
tcatctttgttttctttctttatgtattcaatttcta |
256 |
Q |
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| T |
3093299 |
tcatctttgttttctttctttatgtagtcaatttcta |
3093263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 3099356 - 3099117
Alignment:
| Q |
20 |
gttcatttgataatcacaaggaagagagctttattcggagataacttcatcgtcaaagatgtcaacaacaaggttgtgttcacagttaaaagtactgtag |
119 |
Q |
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| T |
3099356 |
gttcatttgacaatcacaaggaacagaaatatattaggagatagtttcatcatcaaagatatcaaccacaatgttgttttcacagttaaaagtaatgtag |
3099257 |
T |
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| Q |
120 |
ccatcataaaaccctgtcagaatcggttcttatttgatgctaatggaaactgcattttccatcttcgaaaatcggtttgctcatcaacta---tattcaa |
216 |
Q |
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| T |
3099256 |
ccatcttaacaccctaccaaaaccggttcttatttgatgccaatggaaaccgcattctccatcttcgaaaatcggtttgttcatcaactatattattcaa |
3099157 |
T |
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| Q |
217 |
gattcatctttgttttctttctttatgtattcaatttcta |
256 |
Q |
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| T |
3099156 |
gattcatctctattttctttttttatttagtgaatttcta |
3099117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 3083294 - 3083226
Alignment:
| Q |
143 |
cggttcttatttgatgctaatggaaactgcattttccatcttcgaaaatcggtttgctcatcaactata |
211 |
Q |
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|||||||||||||||||||||||||| |||| | ||||| || | ||||||| | |||||||||||| |
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| T |
3083294 |
cggttcttatttgatgctaatggaaatcccattcttcatctccgtagatcggttcgttcatcaactata |
3083226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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