View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12943_low_53 (Length: 276)
Name: NF12943_low_53
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_53 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 38345350 - 38345102
Alignment:
| Q |
1 |
gatgcataagctgtcaagtcttcctcagagaaccatggtgggaggggagtagatgggttaaacaagtccatgatttcttgatcatcacctgctaccggca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38345350 |
gatgcataagctgtcaagtcttcctcagagaaccatggtgggaggggagtagatgggttaaacaagtccattatttcttgatcatcacctgctaccggca |
38345251 |
T |
|
| Q |
101 |
cctcacttttagaaaagagtgtatatatgttccttattactgacttaacatcaaatcggccaaaatctgcttctgctctcccaggctcctgaattaattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
38345250 |
cctcacttttagaaaagagtgtatatatgttccttattactgacttaacatcaaatcggccaaaatctgtttctgctctaccaggctcctgaattaattt |
38345151 |
T |
|
| Q |
201 |
actcaatagtttatcattttcataaactactccgaacttaaatacaagc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38345150 |
actcaatagtttatcattttcataaactactccgaacttaaatacaagc |
38345102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 38350664 - 38350426
Alignment:
| Q |
1 |
gatgcataagctgtcaagtcttcctcagagaaccatggtgggaggggagtagatgggttaaacaagtccatgatttcttgatcatcacctgctaccggca |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| |
|
|
| T |
38350664 |
gatgcataagctgttaagtcttcctcagagaaccatggtgggaggggagtagatgggttaaacaagtccattatttcttgatcatcacttgctactggca |
38350565 |
T |
|
| Q |
101 |
cctcacttttagaaaagagtgtatatatgttccttattactgacttaacatcaaatcggccaaaatctgcttctgctctcccaggctcctgaattaattt |
200 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38350564 |
cctcagttttagaaaagagtatatagatgttccttataactgatttgacatcaaagcggccgaaatctgcttctgctctcccaggctcctgaattagttt |
38350465 |
T |
|
| Q |
201 |
actcaatagtttatcattttcataaactactccgaactt |
239 |
Q |
| |
|
|||||| |||| || ||| | |||||||||||| ||||| |
|
|
| T |
38350464 |
actcaacagttcattattgttataaactactccaaactt |
38350426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University