View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_54 (Length: 275)
Name: NF12943_low_54
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 7150916 - 7150666
Alignment:
| Q |
10 |
aagaatatgatgttgttgatgaggtgcgtatgcagttgctacaacttgtagccttgtttctatgtcatggcaatcctttaattgattgcttcatcaagaa |
109 |
Q |
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| T |
7150916 |
aagaaaatgatgttgttgatgaggtgcgtatgcagttgctacaacttgtagccttgtttctatgtcatggcaatcctttaattgattgcttcatcaagaa |
7150817 |
T |
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| Q |
110 |
gaatccttgtgtgtctgacatcgagttaaatgtaacatgcgaggctgaaagtgacaattattatggtgtcacatattttgtatctttcatacgtacggtc |
209 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7150816 |
gaatccttgtgtgtctgacatcaggttaaatgtaacatgcgaggctgaaagcgacaattattatggtgtcacatattttgtatctttcatacgttcggtc |
7150717 |
T |
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| Q |
210 |
agataaataaacaatactggtataaaagacaattttatgttggttactctt |
260 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
7150716 |
agataaataaacaatactagtataaaagacaattttatgttagttactctt |
7150666 |
T |
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