View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_59 (Length: 250)
Name: NF12943_low_59
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 17380587 - 17380467
Alignment:
| Q |
9 |
gaagaatatcagtaatagtataacagaaaaactaagtcatgtagaaatattttgtgcagaccatgcacacgtcaatccaattacgacctaacaacaattc |
108 |
Q |
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| T |
17380587 |
gaagaatatcagtaatagtataacagaaaaattaagtcatgtagaaatattttgtgcagac----cacacttcaatccaattaagacctaacaacaattc |
17380492 |
T |
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| Q |
109 |
aaaattcaaaagatattgacacaag |
133 |
Q |
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| T |
17380491 |
aaaattcaaaagatattgacacaag |
17380467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 17389636 - 17389519
Alignment:
| Q |
9 |
gaagaatatcagtaatagtataacagaaaaactaagtcatgtagaaatattttgtgcagaccatgcacacgtcaatccaattacgacctaacaacaattc |
108 |
Q |
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| T |
17389636 |
gaagaatatcaataatagtataacagaaaaaataagtcatgtagaaa-attatgtgcacacct---acaagtaaatccaattatgacctaacaacaattc |
17389541 |
T |
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| Q |
109 |
aaaattcaaaagatattgacac |
130 |
Q |
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| T |
17389540 |
aaaattcaaaagatattgacac |
17389519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 17380309 - 17380240
Alignment:
| Q |
181 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatct |
250 |
Q |
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| T |
17380309 |
taaattttctaaagattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatct |
17380240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 17384088 - 17384025
Alignment:
| Q |
181 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcata |
246 |
Q |
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| T |
17384088 |
taaattttctaaaaattgagggctctccattggatttgggtga--agagtatggcaaatggtcata |
17384025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 17392799 - 17392735
Alignment:
| Q |
181 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataa |
247 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||| |
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| T |
17392799 |
taaattttctaaaaattgagggctctccattggatttgggtga--agagtatgatgaatggtcataa |
17392735 |
T |
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