View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_65 (Length: 238)
Name: NF12943_low_65
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30275852 - 30276071
Alignment:
| Q |
1 |
caaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtggtttatgtgtgtattcaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275852 |
caaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtggtttatgtgtgtattcaaaac |
30275951 |
T |
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| Q |
101 |
ctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaagaacaatacatgactgcaaacttcgcagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275952 |
ctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaagaacaatacatgactgcaaacttcgcagcc |
30276051 |
T |
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| Q |
201 |
tttatggcagaggacaaacc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
30276052 |
tttatggcagaggacaaacc |
30276071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 7779163 - 7779350
Alignment:
| Q |
1 |
caaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtggtttatgtgtgtattcaaaac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7779163 |
caaacactccagacacaaggtatttctctaaaatccaagaatcacttactgagaatataggaatcactttcttaaagtggtttatgtgtgtattcaaaa- |
7779261 |
T |
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| Q |
101 |
ctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaagaacaatacatgactgcaaac |
191 |
Q |
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||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
7779262 |
ctcttcaatgcaaggaaagagatgctttaccaagtatggtagcagcattaatttctgatcttctaac--agaacaatccatgactgcaaac |
7779350 |
T |
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