View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_low_67 (Length: 234)

Name: NF12943_low_67
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_low_67
NF12943_low_67
[»] chr3 (9 HSPs)
chr3 (16-231)||(28706458-28706673)
chr3 (105-205)||(13417332-13417431)
chr3 (79-203)||(30047746-30047870)
chr3 (16-82)||(13417487-13417553)
chr3 (79-203)||(18726281-18726405)
chr3 (16-82)||(30047649-30047715)
chr3 (86-203)||(27367472-27367589)
chr3 (79-203)||(27338603-27338727)
chr3 (16-64)||(27367630-27367678)
[»] chr1 (2 HSPs)
chr1 (79-203)||(24274196-24274320)
chr1 (16-82)||(24274101-24274167)
[»] chr4 (3 HSPs)
chr4 (85-203)||(53471021-53471139)
chr4 (16-82)||(53471176-53471242)
chr4 (31-83)||(9008944-9008996)
[»] scaffold0043 (1 HSPs)
scaffold0043 (80-203)||(79430-79553)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 28706458 - 28706673
Alignment:
Q  16 gttgcttcctccaagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatgatattctttatgggcataagatgaaggatcttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28706458 gttgcttcctccaagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatgatattctttatgggcataagatgaaggatcttga 28706557  T
Q  116 gttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaagggcacactagattccatcaaagcacctctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28706558 gttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaagggcacactagattccatcaaagcacctctt 28706657  T
Q  216 atttcttacccttcat 231  Q
    ||||||||||||||||    
T  28706658 atttcttacccttcat 28706673  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 13417431 - 13417332
Alignment:
Q  105 aaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaagggcacactagattccatca 204  Q
    |||||||||| ||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13417431 aaggatcttgggttctgtgaacactgtgtttttgggaaactacatcgcaataagtttccaaaagcgattcatag-acaaagggcacactagattacatca 13417333  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 30047746 - 30047870
Alignment:
Q  79 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatag 178  Q
    ||||| || ||| |||||| || || || ||||||| ||| ||| || ||||||||| ||||||||||||||| || |||||||||||||||| ||||||    
T  30047746 atgatcttatttgtgggcacaaaataaatgatcttgggttctgtgaaaactgtgtttttgggaaactacatcgaaataagtttccaaaagcgaatcatag 30047845  T
Q  179 aacaaagggcacactagattccatc 203  Q
    |||||||||||||||||||| ||||    
T  30047846 aacaaagggcacactagattacatc 30047870  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 13417553 - 13417487
Alignment:
Q  16 gttgcttcctccaagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatga 82  Q
    |||||||||||| ||||||||||  |||||||||||| ||||||||||| |||||||| ||||||||    
T  13417553 gttgcttcctccgagattgaccataaagatatgacgaggttgtggcatatgaggcttgggcatatga 13417487  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 18726281 - 18726405
Alignment:
Q  79 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatag 178  Q
    ||||| |||||| |||||| ||||| |||||| ||| ||| ||| |||| |||| || || ||||||  |||||||||||||||| ||||| |||||  |    
T  18726281 atgatcttctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttgagaaactttatcgcaacaagtttcctaaagcaattcaatg 18726380  T
Q  179 aacaaagggcacactagattccatc 203  Q
    ||| || ||||||||||||| ||||    
T  18726381 aacgaatggcacactagattacatc 18726405  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 30047649 - 30047715
Alignment:
Q  16 gttgcttcctccaagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatga 82  Q
    |||||||||||| |||||||| ||||||| |||| |||||||||||||| ||||||||  |||||||    
T  30047649 gttgcttcctccgagattgactaagaagaaatgaagaagttgtggcatatgaggcttggacatatga 30047715  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 27367589 - 27367472
Alignment:
Q  86 tctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaag 185  Q
    ||||| |||||| ||||| |||||| ||| ||| ||| |||| |||| || || ||||||  |||||||||||||||| ||||| |||||  |||| ||     
T  27367589 tctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttgagaaactttatcgcaacaagtttcctaaagcaattcaatgaacgaaa 27367490  T
Q  186 ggcacactagattccatc 203  Q
    ||||||||||||| ||||    
T  27367489 ggcacactagattacatc 27367472  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 27338727 - 27338603
Alignment:
Q  79 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatag 178  Q
    ||||| |||||| || ||| ||||| |||||| ||| ||| ||| |||| |||  || || ||||||  |||||||||||||||| ||||| |||||  |    
T  27338727 atgatcttctttgtgagcacaagataaaggattttgggttctgtgaacattgtaattttgagaaactttatcgcaacaagtttcctaaagcaattcaacg 27338628  T
Q  179 aacaaagggcacactagattccatc 203  Q
    ||| ||||| |||||||||| ||||    
T  27338627 aacgaagggaacactagattacatc 27338603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 27367678 - 27367630
Alignment:
Q  16 gttgcttcctccaagattgaccaagaagatatgacgaagttgtggcata 64  Q
    |||||||||||| | |||||||||||||||||||| || ||||||||||    
T  27367678 gttgcttcctccgaaattgaccaagaagatatgacaaaattgtggcata 27367630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 24274196 - 24274320
Alignment:
Q  79 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatag 178  Q
    |||||||||||| |||||||||||| || ||||||| |||  || |||||||||||| |||| |||||||||||||||| ||||| ||||  ||||||||    
T  24274196 atgatattctttgtgggcataagataaaagatcttgggttccgtgaacactgtgtttttgggtaactacatcgcaacaaatttcctaaagtaattcatag 24274295  T
Q  179 aacaaagggcacactagattccatc 203  Q
    |||||||| |||| |||||| ||||    
T  24274296 aacaaaggacacaatagattacatc 24274320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 24274101 - 24274167
Alignment:
Q  16 gttgcttcctccaagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatga 82  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24274101 gttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatgaggcttgggcatatga 24274167  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 53471139 - 53471021
Alignment:
Q  85 ttctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaa 184  Q
    |||||||||| || ||||| ||||||| || ||| | | |||||| || || |||||||| ||||||||| ||||||| ||||| |||||||||||||||    
T  53471139 ttctttatggacacaagataaaggatcctgggttatctgaacactatgcttttgggaaacgacatcgcaataagtttctaaaagtgattcatagaacaaa 53471040  T
Q  185 gggcacactagattccatc 203  Q
    |||||||||||||| ||||    
T  53471039 gggcacactagattacatc 53471021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 53471242 - 53471176
Alignment:
Q  16 gttgcttcctccaagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatga 82  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  53471242 gttgcttccttcgagattgaccaagaagatatgacgaaattgtggcatatgaggcttgggcatatga 53471176  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 9008996 - 9008944
Alignment:
Q  31 attgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatgat 83  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||||||||    
T  9008996 attgactaagaagatatgacgaagttgtggcatatgaggcttgggcatatgat 9008944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 79430 - 79553
Alignment:
Q  80 tgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcataga 179  Q
    |||| |||||| |||||| ||||| |||||| ||  ||| | | |||| |||| || || ||||||  |||||||||||||||| ||||| |||||  ||    
T  79430 tgatcttctttgtgggcacaagataaaggattttaggttctctgaacattgtgattttgagaaactttatcgcaacaagtttcctaaagcaattcaatga 79529  T
Q  180 acaaagggcacactagattccatc 203  Q
    || ||| |||||||||||| ||||    
T  79530 acgaagagcacactagattacatc 79553  T

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