View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_68 (Length: 233)
Name: NF12943_low_68
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38345326 - 38345552
Alignment:
| Q |
1 |
aggaagacttgacagcttatgcatcactatatgaaaaatctggcttcagatttgcactgcaggttccatacaggtaatcaaaatctcaaaattcaactta |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38345326 |
aggaagacttgacagcttatgcatcacaatatgaaaaatctggcttcagatttgcactgcaggttccatacaggtaatcaaaatctcaaaattcaactta |
38345425 |
T |
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| Q |
101 |
aaatgctctttaataaatggaatgttcagtattcttacac-ttttagagatacattaaggaactatagagataccccttcacatatttagggaccaaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38345426 |
aaatgctctttaataaatggaatgttcagtattcctacactttttagagatacattaaggaactatagagataccccttcacatatttagggaccaaaat |
38345525 |
T |
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| Q |
200 |
taccgcttactcattgcattttcttcg |
226 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
38345526 |
taccgcttactcatggcattttcttcg |
38345552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 38350640 - 38350786
Alignment:
| Q |
1 |
aggaagacttgacagcttatgcatcactatatgaaaaatctggcttcagatttgcactgcaggttccatacaggtaatcaaaatctcaaaattcaactta |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38350640 |
aggaagacttaacagcttatgcatcactgtatgaaaaatctggcttcagatttgcattgcaggttccatacaggtaatcaaagtctcaaaattcaactta |
38350739 |
T |
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| Q |
101 |
aaatgctctttaataaatggaatgttcagtattcttacacttttaga |
147 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| |||| |
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| T |
38350740 |
aaatgctctttaacaaatggaatgttcaatattcttacacttctaga |
38350786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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