View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_7 (Length: 663)
Name: NF12943_low_7
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_7 |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 303 - 653
Target Start/End: Complemental strand, 2558951 - 2558598
Alignment:
| Q |
303 |
ttatccctcatcatatatttccatgtctg-aaaacgacacgaaatccattttacttgttgacttccgttgctgagcaaaatagacaattgattcaatga- |
400 |
Q |
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| T |
2558951 |
ttatccctcatcatatgtttccatgtctggaaaacgacatgaaattcattttacctgtcgacttccgatgttgagcaaaatagacaattgattcaatgac |
2558852 |
T |
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| Q |
401 |
-tataaccgaatagttgaatataaatgcaaaccagacccttttgcttatgcattagcatctacacatgctttnnnnnnntcccttaaatgaagttnnnnn |
499 |
Q |
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| T |
2558851 |
atataaccgaatagttgaatataaatgcaaaccagaccctat-gcttatgcattagcatctacacatgctttaaaaaaatcccttaaatgaagttaaaaa |
2558753 |
T |
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| Q |
500 |
nngccctaggtctggcaagatataggatctggttcaactccgcaaactatttttagacttgcaaggcattgactctccttctagtatggaggtggatggg |
599 |
Q |
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| T |
2558752 |
aagccctaggtcttgcaagatataggatctggtttaactccgcaaacgatttttagacttgcaaggcattgactctccttctagtatggagatggatggg |
2558653 |
T |
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| Q |
600 |
tccaccaatggattttgtatctagcataaccacctatttgatgaa-gtgatgatg |
653 |
Q |
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| T |
2558652 |
tccaccaatgggttttgtatctaccataaccacctatttgatgaatgtgatgatg |
2558598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 2551665 - 2551548
Alignment:
| Q |
64 |
acacctactatttgctatcaatcttaatcctcctacatacttcattgcaagtcttcacttggactagtgata---agaatttttaggtcctttatataac |
160 |
Q |
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| T |
2551665 |
acacctactatttgctatcaatcttaatcctcctacatacttcattggaagtcttcacttggactagtgataagaagaatttttaggtcctttatataac |
2551566 |
T |
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| Q |
161 |
agtaagtatggcagtttt |
178 |
Q |
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| T |
2551565 |
agtaagtatgccagtttt |
2551548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 2559292 - 2559163
Alignment:
| Q |
73 |
atttgctatcaatctta-atcctcctacatacttcattgcaagtcttcacttggactagtgat---aagaatttttaggtcctttatataacagtaagta |
168 |
Q |
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|||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |||||| |||||| ||||| |||||||| |
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| T |
2559292 |
atttcctatcaaccttagatcctcctacagacttcattgcaagtcttcacttggactagtaatacgaaggatttttcagtccttcgtataatagtaagta |
2559193 |
T |
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| Q |
169 |
tggcagttttatcaaaaataaaatatcaaa |
198 |
Q |
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| T |
2559192 |
tgccggttttatcaaaaataaaacatcaaa |
2559163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 15948 - 15994
Alignment:
| Q |
155 |
tataacagtaagtat---ggcagttttatcaaaaataaaatatcaaa |
198 |
Q |
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| T |
15948 |
tataacagtaagtattatgccagttttatcaaaaataaaatatcaaa |
15994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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