View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_low_77 (Length: 211)

Name: NF12943_low_77
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_low_77
NF12943_low_77
[»] chr6 (1 HSPs)
chr6 (15-195)||(29336507-29336685)
[»] chr8 (5 HSPs)
chr8 (29-194)||(24323173-24323337)
chr8 (60-195)||(10949613-10949748)
chr8 (60-195)||(10957618-10957753)
chr8 (68-195)||(24126578-24126705)
chr8 (68-195)||(140864-140991)
[»] chr1 (2 HSPs)
chr1 (48-179)||(19036983-19037114)
chr1 (141-195)||(22376357-22376411)
[»] chr3 (2 HSPs)
chr3 (78-195)||(6172328-6172445)
chr3 (18-195)||(6251609-6251788)
[»] chr2 (1 HSPs)
chr2 (48-195)||(9683836-9683982)
[»] chr4 (2 HSPs)
chr4 (117-195)||(18585298-18585376)
chr4 (154-195)||(23808207-23808248)
[»] chr7 (1 HSPs)
chr7 (147-195)||(19280124-19280172)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 29336507 - 29336685
Alignment:
Q  15 ggagcagaggtcactttgcatagtgctaagagagtgttgagcttgcgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctaca 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29336507 ggagcaaaggtcactttgcatagtgctaagagagtgttgagcttgtgacatgaagatggtttttt-actatgcccacaatagatttttcgaatccctaca 29336605  T
Q  115 acttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctacttctttatgggttgagtttctttatg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29336606 acttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctacttctttat-ggttgagtttctttatg 29336685  T

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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 24323337 - 24323173
Alignment:
Q  29 tttgcatagtgctaagagagtgttgagcttgcgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaag 128  Q
    ||||||||||||||| | |||||||||| || || ||| ||||||||  |||||||||| |||| ||||||||| |||| ||| |||||||||||||| |    
T  24323337 tttgcatagtgctaacaaagtgttgagcctgtgacatggagatggttcattgactatgctcacagtagattttt-gaatgccttcaacttggtagacatg 24323239  T
Q  129 tcggcactactacgtgaggtgagattgagatgtccatctacttctttatgggttgagtttctttat 194  Q
    |||||||| ||||||||||| ||||||||||| || |||| ||| |||||||||||||||||||||    
T  24323238 tcggcactgctacgtgaggtaagattgagatgcccgtctatttcattatgggttgagtttctttat 24323173  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 10949613 - 10949748
Alignment:
Q  60 cgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagat 159  Q
    ||||||| ||||||||  |||||||||| |||| ||| |||||||||| | | |||||||||||||| |||  || |  | ||||| |||||||||||||    
T  10949613 cgatatggagatggttccttgactatgctcacagtagttttttcgaatgctttcaacttggtagacatgtcaacattgttgcgtgaagtgagattgagat 10949712  T
Q  160 gtccatctacttctttatgggttgagtttctttatg 195  Q
    ||||||||| ||||||||| |||||| || ||||||    
T  10949713 gtccatctatttctttatgagttgagcttttttatg 10949748  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 10957618 - 10957753
Alignment:
Q  60 cgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagat 159  Q
    ||||||| ||||||||  |||||||||| |||| ||| |||||||||| | | |||||||||||||| |||  || |  | ||||| |||||||||||||    
T  10957618 cgatatggagatggttccttgactatgctcacagtagttttttcgaatgctttcaacttggtagacatgtcaacattgttgcgtgaagtgagattgagat 10957717  T
Q  160 gtccatctacttctttatgggttgagtttctttatg 195  Q
    ||||||||| ||||||||| |||||| || ||||||    
T  10957718 gtccatctatttctttatgagttgagcttttttatg 10957753  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 24126705 - 24126578
Alignment:
Q  68 agatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatct 167  Q
    ||||||||  ||||||||||  | | ||||||||| ||||   | ||||||||||| || |||| |||| ||||||||||||||||||||||| | ||||    
T  24126705 agatggttccttgactatgcttatagtagattttttgaatgttttcaacttggtaggcaggtcgacactgctacgtgaggtgagattgagatgcctatct 24126606  T
Q  168 acttctttatgggttgagtttctttatg 195  Q
    | ||||||| ||||| |||||| |||||    
T  24126605 atttctttaagggtttagtttcattatg 24126578  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 140991 - 140864
Alignment:
Q  68 agatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatct 167  Q
    ||||||||||||  |||||| ||| |||||||| |||||| | | ||||||| |||||| ||||||| | || | | |||||||  |||||||  | | |    
T  140991 agatggttttttatctatgctcacgatagatttctcgaatgctttcaacttgatagacacgtcggcattgctgcatcaggtgagtctgagatgctcgtat 140892  T
Q  168 acttctttatgggttgagtttctttatg 195  Q
    | ||||||||||||||||| ||||||||    
T  140891 atttctttatgggttgagtctctttatg 140864  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 19037114 - 19036983
Alignment:
Q  48 gtgttgagcttgcgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgagg 147  Q
    ||||||| | ||||| ||| |||||||| |||| ||||||  ||| |||||||||||||| | | |||||||||||| |  |||||||||||||||||||    
T  19037114 gtgttgaacctgcgacatggagatggttctttggctatgcttacagtagatttttcgaatgctttcaacttggtagatagttcggcactactacgtgagg 19037015  T
Q  148 tgagattgagatgtccatctacttctttatgg 179  Q
    ||||||||||||| | ||||| ||||||||||    
T  19037014 tgagattgagatgcctatctatttctttatgg 19036983  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 22376411 - 22376357
Alignment:
Q  141 cgtgaggtgagattgagatgtccatctacttctttatgggttgagtttctttatg 195  Q
    |||||||||||| ||| || |||||||| ||||||||| ||||||||||||||||    
T  22376411 cgtgaggtgagaatgaaatttccatctatttctttatgagttgagtttctttatg 22376357  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 6172328 - 6172445
Alignment:
Q  78 ttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctacttctttat 177  Q
    ||||||||||  ||| |||||||||||||| ||| |||||||||||| |  || ||||| |||||||| |||||||||||||| |||| || |||| |||    
T  6172328 ttgactatgcttacagtagatttttcgaatgccttcaacttggtagatagatcagcactgctacgtgatgtgagattgagatgcccatgtatttctctat 6172427  T
Q  178 gggttgagtttctttatg 195  Q
    ||||||||||||||||||    
T  6172428 gggttgagtttctttatg 6172445  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 6251609 - 6251788
Alignment:
Q  18 gcagaggtcactttgcatagtgctaagagagtgttgagcttgcgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaact 117  Q
    ||||||| || |||||||||||  || ||||| |||| | | ||| ||| ||||||||  ||||| ||||  | | |||||||||||||| ||| |||||    
T  6251609 gcagaggccattttgcatagtgtcaatagagtattgaacctacgacatggagatggttccttgacaatgcttatagtagatttttcgaatgccttcaact 6251708  T
Q  118 tggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctact--tctttatgggttgagtttctttatg 195  Q
    ||||||| | ||| ||||| |||||||| |||||||||||||| ||||||| |  ||| |||||||||||||||||||||    
T  6251709 tggtagataggtcagcactgctacgtgatgtgagattgagatgcccatctatttctctctatgggttgagtttctttatg 6251788  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 9683836 - 9683982
Alignment:
Q  48 gtgttgagcttgcgatatgaagatggttttttgactatgcccacaatagatttttc-gaatccctacaacttggtagacaagtcggcactactacgtgag 146  Q
    ||||||| | ||||| ||| ||||||||  ||||||||||  | | |||||||||  |||| | | ||||||||||||||| | |  ||| |||||||||    
T  9683836 gtgttgaacctgcgacatggagatggttccttgactatgcttatagtagatttttttgaatgctttcaacttggtagacaaattg--actgctacgtgag 9683933  T
Q  147 gtgagattgagatgtccatctacttctttatgggttgagtttctttatg 195  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||||||    
T  9683934 gtgagattgagatgcccatctatttctttatgagttaagtttctttatg 9683982  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 18585298 - 18585376
Alignment:
Q  117 ttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctacttctttatgggttgagtttctttatg 195  Q
    |||||||||||||||||||||| |||| ||| ||   | |||| |||||||| ||||||||| |||||||| |||||||    
T  18585298 ttggtagacaagtcggcactacaacgttaggagaaggttagatttccatctatttctttatgtgttgagttcctttatg 18585376  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 23808207 - 23808248
Alignment:
Q  154 tgagatgtccatctacttctttatgggttgagtttctttatg 195  Q
    ||||||| |||| ||||||||||||||||| |||||||||||    
T  23808207 tgagatgcccatatacttctttatgggttgtgtttctttatg 23808248  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 19280172 - 19280124
Alignment:
Q  147 gtgagattgagatgtccatctacttctttatgggttgagtttctttatg 195  Q
    |||||||||||||| ||||  | ||||||||||||||||||||||||||    
T  19280172 gtgagattgagatgcccattcatttctttatgggttgagtttctttatg 19280124  T

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