View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_78 (Length: 201)
Name: NF12943_low_78
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 6969783 - 6969616
Alignment:
| Q |
17 |
agagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatctgtggtgatccagcttatgtgagagaagcttgtgaag |
116 |
Q |
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| T |
6969783 |
agagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatttgtggtgatccagcttatgtgagagaagcttgtgaag |
6969684 |
T |
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| Q |
117 |
ctagcttgaagagacttgatattgattgcatcgatctctattatcaacatcgtattgatactcatctt |
184 |
Q |
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| T |
6969683 |
ctagcttgaagagacttgatattgattgcatcgatctctattatcaacatcgtattgatactcgtctt |
6969616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 6922526 - 6922359
Alignment:
| Q |
17 |
agagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatctgtggtgatccagcttatgtgagagaagcttgtgaag |
116 |
Q |
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| T |
6922526 |
agagagaaggttgaattggctactaagtttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtgagg |
6922427 |
T |
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| Q |
117 |
ctagcttgaagagacttgatattgattgcatcgatctctattatcaacatcgtattgatactcatctt |
184 |
Q |
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| T |
6922426 |
gtagcttgaagagacttgatattgattgtattgatctctattatcaacatcgtattgatactcgtctt |
6922359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 6955686 - 6955853
Alignment:
| Q |
17 |
agagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatctgtggtgatccagcttatgtgagagaagcttgtgaag |
116 |
Q |
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| T |
6955686 |
agagagaaggttgaattggctactaagtttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtgagg |
6955785 |
T |
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| Q |
117 |
ctagcttgaagagacttgatattgattgcatcgatctctattatcaacatcgtattgatactcatctt |
184 |
Q |
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| T |
6955786 |
gtagcttgaagagacttgatattgattgtattgatctctattatcaacatcgtattgatactcgtctt |
6955853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 6918347 - 6918190
Alignment:
| Q |
17 |
agagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatctgtggtgatccagcttatgtgagagaagcttgtgaag |
116 |
Q |
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| T |
6918347 |
agagagaaagttgaattggctacaaaatttggagtcagagctggtgatggaaaagttgagatctgtggtgatccaggctatgtgagagtagcttgtgagg |
6918248 |
T |
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| Q |
117 |
ctagcttgaagagacttgatattgattgcatcgatctctattatcaacatcgtattga |
174 |
Q |
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| T |
6918247 |
gcagcttgaagagacttgatattgattgtattgatctctattatcaacatcgtattga |
6918190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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