View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_9 (Length: 622)
Name: NF12943_low_9
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 38397490 - 38396879
Alignment:
| Q |
1 |
aagcttcttcgcagctgtggcacaatcattttgaatttttcttcctttcatcaatgattgctccattgccttcattctctcgtttgcactgcattagtag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397490 |
aagcttcttcgcagctgtggcacaatcattttgaatttttcttcctttcatcaatgattgctccattgccttcattctctcgtttgcactgcattagtag |
38397391 |
T |
|
| Q |
101 |
tattacaaatgtaagtttaaaccggataatgaatgtagatcagtgcagagctaaactattcaacatatttatatgctgctgcagaataaagttaaagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397390 |
tattacaaatgtaagtttaaaccggataatgaatgtagatcagtgcagagctaaactattcaacatatttatatgctgctgcagaataaagttaaagatg |
38397291 |
T |
|
| Q |
201 |
aaataactaacgtcatggctgacacgtgaggtgatagctcagtggttaaagcgtagccttgtaacctcaagatgttgagctcgaatcccattggggacag |
300 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397290 |
aaataactaacgtcatagctgacacgtgaggggatagctcagtggttaaagcgtagccttgtaacctcaagatgttgagctcgaatcccattggggacag |
38397191 |
T |
|
| Q |
301 |
ttgtaaaatggcaattagtgctacgtgaatcaataaaaattcccccttccccatttgnnnnnnnnnnnnctaacttactagctacaataaaattggaaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38397190 |
ttgtaaaatggcaattagtgctacgtgaatcaataaaaattcccccttccccatttgaaaaaaaaaaaactaacttactagctacaataaaattggaaaa |
38397091 |
T |
|
| Q |
401 |
tcctgatgacatgaagattcttaaaggctcacttacttctttggcaagctagaatctttgcttgcatctccaagtgttcgcgaaatttcctttacccgta |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38397090 |
tcctgatgacatgaagattcttaaaggctcacttacttctttggcaagctagaatctttgcttgcatctccaagtgttcgtgaaatttcctttacccgta |
38396991 |
T |
|
| Q |
501 |
actgaagctcccgagtgagatagggaattttctttattttctgaagggaaagataaactttagcttgaatgagctgatcctttagtttccgtaccagagc |
600 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38396990 |
actgaagctcccgagtgagatagggaattttctttattttctgaagggaaagataaactttagcttggatgagctgatcctttagtttccgtaccagagc |
38396891 |
T |
|
| Q |
601 |
aacagatgatgt |
612 |
Q |
| |
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|||||||||||| |
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| T |
38396890 |
aacagatgatgt |
38396879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 56070245 - 56070343
Alignment:
| Q |
12 |
cagctgtggcacaatcattttgaatttttcttcctttcatcaatgattgctccattgccttcattctctcgtttgcactgcattagtagtattacaaat |
110 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| |
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| T |
56070245 |
cagctgtggcacaatcatcttgaatttgacttgctttcatcaatgattgctccattgccttcattctctcattttcactgcattagtagaattacaaat |
56070343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 419 - 513
Target Start/End: Original strand, 56070404 - 56070498
Alignment:
| Q |
419 |
tcttaaaggctcacttacttctttggcaagctagaatctttgcttgcatctccaagtgttcgcgaaatttcctttacccgtaactgaagctcccg |
513 |
Q |
| |
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||||||||| | ||||||||| |||||||| ||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||| |
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| T |
56070404 |
tcttaaaggattacttacttccttggcaagtcggaatctttgcttgcatctccaagcgttcgtgaaacttccttcacccgtaactgaagctcccg |
56070498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 594
Target Start/End: Original strand, 56070513 - 56070564
Alignment:
| Q |
543 |
gaagggaaagataaactttagcttgaatgagctgatcctttagtttccgtac |
594 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
56070513 |
gaagggaaagataaactttagcttggatgagctgatcctttagtttctgtac |
56070564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 346
Target Start/End: Original strand, 50892219 - 50892338
Alignment:
| Q |
228 |
gaggtgatagctcagtggttaaagcgtagccttgtaacctcaagatgttgagctcgaatcccattggggacag-ttgtaaaatggcaattagtgctacgt |
326 |
Q |
| |
|
|||||| |||||||||||| | ||| |||||||||||||||||| || |||| || |||||| | ||| | || ||||||||| | |||||||| || | |
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| T |
50892219 |
gaggtgctagctcagtggtaagagcttagccttgtaacctcaaggtgctgagttctaatcccctcgggcatagtttgtaaaatttccattagtgccactt |
50892318 |
T |
|
| Q |
327 |
gaatcaataaaaattccccc |
346 |
Q |
| |
|
||||||||||| ||| |||| |
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| T |
50892319 |
gaatcaataaatatttcccc |
50892338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 25573384 - 25573324
Alignment:
| Q |
291 |
ttggggacagttgtaaaatggcaattagtgctacgtgaatcaataaaaa-ttcccccttcc |
350 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||| |
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| T |
25573384 |
ttggggacagttgtaaaatggccgttagtgccacttgaatcaataaaaatttcccccttcc |
25573324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 20159510 - 20159424
Alignment:
| Q |
222 |
acacgtgaggtgatagctcagtggttaaagcgtagccttgtaacctcaagatgttgagctcgaatcccattggggacagttgtaaaa |
308 |
Q |
| |
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|||| ||||||| ||| |||||||||| ||| ||||||||||| |||||| |||| || |||| |||| ||| ||||||| |||||| |
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| T |
20159510 |
acacttgaggtgctagttcagtggttagagcctagccttgtaatctcaaggtgttcagttcgagtccccttgaggacagtcgtaaaa |
20159424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 356
Target Start/End: Original strand, 43710595 - 43710697
Alignment:
| Q |
254 |
tagccttgtaacctcaagatgttgagctcgaatcccattggggacagttgtaaaatggcaattagtgctacgtgaatcaataaaaattcccccttcccca |
353 |
Q |
| |
|
||||||||||||| | || ||||||| ||||||||| | |||||||||||| |||||| || ||| || |||| ||||||| |||||||||||||| |
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| T |
43710595 |
tagccttgtaaccccgaggtgttgagttcgaatcccctcggggacagttgtgaaatggtcatcgatgccacatgaaataataaaatttcccccttcccca |
43710694 |
T |
|
| Q |
354 |
ttt |
356 |
Q |
| |
|
||| |
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|
| T |
43710695 |
ttt |
43710697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 521
Target Start/End: Complemental strand, 10169496 - 10169426
Alignment:
| Q |
451 |
agaatctttgcttgcatctccaagtgttcgcgaaatttcctttacccgtaactgaagctcccgagtgagat |
521 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| |||| ||| || |||| ||| |||||||||||||||||| |
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| T |
10169496 |
agaatctttggttgcttctccgagtgttcgtgaaacttctttaacccttaaacgaagctcccgagtgagat |
10169426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 36198982 - 36198890
Alignment:
| Q |
227 |
tgaggtgatagctcagtggttaaagcgtagccttgtaacctcaagatgttgagctcgaatcccattggggacagttgtaaaatggcaattagt |
319 |
Q |
| |
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||||||| ||||| |||||| | ||| |||||||||||||||||| | |||| || |||||| | ||||| ||||||||||| | |||||| |
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| T |
36198982 |
tgaggtgctagcttagtggtaagagcttagccttgtaacctcaaggtactgagttcaaatcccctcggggatggttgtaaaatgaccattagt |
36198890 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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