View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12944_high_14 (Length: 386)

Name: NF12944_high_14
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12944_high_14
NF12944_high_14
[»] chr6 (5 HSPs)
chr6 (1-344)||(33822810-33823153)
chr6 (33-162)||(24572341-24572469)
chr6 (33-174)||(24577707-24577847)
chr6 (263-314)||(26525048-26525099)
chr6 (103-189)||(31789699-31789785)
[»] chr3 (2 HSPs)
chr3 (55-333)||(29566604-29566883)
chr3 (56-162)||(11309717-11309823)
[»] chr4 (2 HSPs)
chr4 (13-180)||(4625478-4625646)
chr4 (20-64)||(39635567-39635611)
[»] chr7 (3 HSPs)
chr7 (8-130)||(33810868-33810990)
chr7 (204-310)||(33810686-33810792)
chr7 (56-108)||(7041920-7041972)
[»] chr1 (2 HSPs)
chr1 (13-330)||(38232627-38232940)
chr1 (56-162)||(6303647-6303753)


Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 33823153 - 33822810
Alignment:
Q  1 gatactactttattggaaggatttgttatgcaatttttaaatggattagaacgagggtgattttacccggtaatattgtttcactccttaaatatttttc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823153 gatactactttgttggaaggatttgttatgcaatttttaaatggattagaacgagggtgattttacccggtaatattgtttcactccttaaatatttttc 33823054  T
Q  101 accatcttctttgagtataaaacatcaaaaagggctcacactcatttgacattcaacaatttggaaaatttggaaagctcaaaatgaggttannnnnnnn 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||  |||||||||||            
T  33823053 atcatcttctttgagtataaaacatcaaaaagggctcacactcatttgacattcaacaatttgaaaaatttaggaagcttgaaatgaggttattttttct 33822954  T
Q  201 nctaaaacttgggagtcaaaggagattgtaaaagtcatcaaagttacttcttaaagatggtttattgctaggaaattaagggatccttgtttgtattacg 300  Q
     ||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  33822953 tctaaaacttgggagtcagaagagattgtaaaagtcatcaaaattacctcttaaagatggtttattgctaggaaattaaggaatccttatttatattacg 33822854  T
Q  301 aatgattttcgaactctcgattttgtcttaactcatgacgttga 344  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  33822853 aatgattttcgaactctctattttatcttaactcatgacgttga 33822810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 24572341 - 24572469
Alignment:
Q  33 atttttaaatggattagaacgagggtgattttacccggtaatattgtttcactccttaaatatttttcaccatcttctttgagtataaaacatcaaaaag 132  Q
    |||||||||| |||  ||||  ||||||||||||| |||||||||||||||||||||  | | |||||| |||||||||||  || |||||||| ||| |    
T  24572341 atttttaaattgatcggaacaggggtgattttacctggtaatattgtttcactcctt-cacaattttcatcatcttctttggctaaaaaacatcgaaagg 24572439  T
Q  133 ggctcacactcatttgacattcaacaattt 162  Q
    |||| ||||||||||| ||| |||||||||    
T  24572440 ggcttacactcatttggcatgcaacaattt 24572469  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 24577707 - 24577847
Alignment:
Q  33 atttttaaatggattagaacgagggtgattttacccggtaatattgtttcactccttaaatatttttcaccatcttctttgagtataaaacatcaaaaag 132  Q
    |||||||||||||  |||||||||||||||||||| | || || ||||||||||||| || ||| |||| ||| ||||||   || |||||||  ||| |    
T  24577707 atttttaaatggaaaagaacgagggtgattttaccggata-tactgtttcactccttcaacattattcatcatattcttttgttaaaaaacattgaaagg 24577805  T
Q  133 ggctcacactcatttgacattcaacaatttggaaaatttgga 174  Q
    |||| ||||||||||| ||| ||||||||| |||||||||||    
T  24577806 ggcttacactcatttggcatgcaacaatttagaaaatttgga 24577847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 26525048 - 26525099
Alignment:
Q  263 tattgctaggaaattaagggatccttgtttgtattacgaatgattttcgaac 314  Q
    |||||||||||||||| ||| ||||||||| |  ||||||||||||||||||    
T  26525048 tattgctaggaaattagggggtccttgtttatgctacgaatgattttcgaac 26525099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 31789785 - 31789699
Alignment:
Q  103 catcttctttgagtataaaacatcaaaaagggctcacactcatttgacattcaacaatttggaaaatttggaaagctcaaaatgagg 189  Q
    ||||| |||||| || |||| ||| ||| ||||| |||||||||||  || |||  |||||||||||||||| ||||| ||||||||    
T  31789785 catctgctttgactaaaaaatatcgaaaggggcttacactcatttggtatgcaaggatttggaaaatttggacagctcgaaatgagg 31789699  T

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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 55 - 333
Target Start/End: Complemental strand, 29566883 - 29566604
Alignment:
Q  55 gggtgattttacccggtaatattgtttcactccttaaatatttttcaccatcttctttgagtataaaacatcaaaaagggctcacactcatttgacattc 154  Q
    ||||||||||| ||| ||||||||||| |||  ||||||  |||||| |||||||||| || | |||||||| ||||||||| || || ||||| ||       
T  29566883 gggtgattttatccgataatattgttttactatttaaattgttttcatcatcttctttaagaa-aaaacatcgaaaagggcttactcttatttggcacgt 29566785  T
Q  155 aacaatttggaaaatttggaaagctcaaaatgaggttannnnnnnnnctaaaacttgggagtcaaaggagattgtaaaagtcatcaaagttacttcttaa 254  Q
    ||  ||||||||||||||| ||| |   |||| |||||         |||||| |||||||||  ||||||||||||||||||||||||| ||  ||||     
T  29566784 aatcatttggaaaatttgggaagtttggaatggggttaatttttcttctaaaatttgggagtcggaggagattgtaaaagtcatcaaagtcaccacttag 29566685  T
Q  255 agatggtttattgctaggaaattaa--gggatccttgtttgtattacgaatgattttcgaactctcgattttgtcttaact 333  Q
    ||||||||||||||||  ||| | |  ||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||    
T  29566684 agatggtttattgctaaaaaaattagggggatccttgtttgtattacgaatgattttcgaaccctctactttatcttaact 29566604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 11309823 - 11309717
Alignment:
Q  56 ggtgattttacccggtaatattgtttcactccttaaatatttttcaccatcttctttgagtataaaacatcaaaaagggctcacactcatttgacattca 155  Q
    ||||||||||||||| |||||||||||||||||| | |||||| || |||||||||||  || ||||| || ||| ||||| |  |||||||| ||| ||    
T  11309823 ggtgattttacccggcaatattgtttcactccttgactattttccatcatcttctttggctaaaaaacgtcgaaaggggcttaacctcatttggcatgca 11309724  T
Q  156 acaattt 162  Q
    |||||||    
T  11309723 acaattt 11309717  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 4625478 - 4625646
Alignment:
Q  13 ttggaaggatttgttatgcaatttttaaatggattagaacgagggtgattttacccggtaatattgtttcactccttaaatatttttcaccatcttcttt 112  Q
    ||||||||||||  ||||||||||||||||||||| || |  || |||||||||| | ||||||||||||||||||| ||||||||||| ||| ||||||    
T  4625478 ttggaaggattttgtatgcaatttttaaatggattggagcagggatgattttacc-gttaatattgtttcactcctttaatatttttcatcatattcttt 4625576  T
Q  113 gag--tataaaacatcaaaaagggctcacactcatttgacattcaacaatttggaaaatttggaaagctc 180  Q
    | |   | |||||||| ||||||||| || |||||||||||| ||||||||| | |||||| | ||||||    
T  4625577 ggggaaaaaaaacatcgaaaagggcttactctcatttgacatgcaacaatttagcaaatttcggaagctc 4625646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39635567 - 39635611
Alignment:
Q  20 gatttgttatgcaatttttaaatggattagaacgagggtgatttt 64  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||    
T  39635567 gatttgatatgcaatttttaaatggatcggaacgagggtgatttt 39635611  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 33810990 - 33810868
Alignment:
Q  8 ctttattggaaggatttgttatgcaatttttaaatggattagaacgagggtgattttacccggtaatattgtttcactccttaaatatttttcaccatct 107  Q
    |||||||| ||||||||| |||| |||||  ||||||||| ||||||| |||||||||||  ||||||||||||||||||   | ||||||||| | |||    
T  33810990 ctttattgcaaggatttgatatggaatttaaaaatggattggaacgagtgtgattttaccaagtaatattgtttcactccgcgactatttttcatcctct 33810891  T
Q  108 tctttgagtataaaacatcaaaa 130  Q
    ||||||  || ||||||||||||    
T  33810890 tctttggttaaaaaacatcaaaa 33810868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 33810792 - 33810686
Alignment:
Q  204 aaaacttgggagtcaaaggagattgtaaaagtcatcaaagttacttcttaaagatggtttattgctaggaaattaagggatccttgtttgtattacgaat 303  Q
    ||||||||| || || |||||||| || |||  |||||||| || ||||| |||| || |||| ||||||||||| | |||| |||||||||||| ||||    
T  33810792 aaaacttggaaggcagaggagattctataagcaatcaaagtcacctcttagagatagtatatttctaggaaattaggcgatcattgtttgtattaagaat 33810693  T
Q  304 gattttc 310  Q
    | |||||    
T  33810692 ggttttc 33810686  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 7041920 - 7041972
Alignment:
Q  56 ggtgattttacccggtaatattgtttcactccttaaatatttttcaccatctt 108  Q
    ||||||||||||||| |||||| ||||||||||| | |||||| || ||||||    
T  7041920 ggtgattttacccggcaatattttttcactccttgactattttccatcatctt 7041972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 38232940 - 38232627
Alignment:
Q  13 ttggaaggatttgttatgcaatttttaaatggattagaacgagggtgattttacccggtaatattgtttcactccttaaatatttttcaccatcttcttt 112  Q
    ||||||||||||| ||||||| |||||||||||   ||| |  |||||||||||||    ||||||||||||||||| | ||||||||| ||| || |||    
T  38232940 ttggaaggatttggtatgcaaattttaaatggaaaggaatggtggtgattttacccaactatattgtttcactccttgactatttttcatcatatttttt 38232841  T
Q  113 gagtataaaacatcaaaaagggctcacactcatttgacattcaacaatttggaaaatttggaaagctcaaaatgaggttannnnnnnnnctaaaacttgg 212  Q
    |  || |||||||| ||| | ||| ||  ||||||| ||| |||||||| ||||||||| | |||||   ||| |||||          |||||| ||||    
T  38232840 ggctaaaaaacatcgaaatgagcttaccttcatttggcatgcaacaatt-ggaaaattttggaagcttggaat-aggtttatttttcttctaaaa-ttgg 38232744  T
Q  213 gagtcaaaggagattgtaaaagtcatcaaagttacttcttaaagatggtttattgctaggaaattaagggatccttgtttgtattacgaatgattttcga 312  Q
    ||| |  ||||||||||| |||| |||||||| || |||| |||||||||||||| ||| ||||||  ||||||||||||||||||  |||| |||| ||    
T  38232743 gagacggaggagattgtagaagttatcaaagtcacctcttgaagatggtttattg-tagaaaattagtggatccttgtttgtattataaatggtttttga 38232645  T
Q  313 actctcgattttgtctta 330  Q
    || |||  ||||||||||    
T  38232644 accctctcttttgtctta 38232627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 6303753 - 6303647
Alignment:
Q  56 ggtgattttacccggtaatattgtttcactccttaaatatttttcaccatcttctttgagtataaaacatcaaaaagggctcacactcatttgacattca 155  Q
    ||||||||||||| | |||||||||||||||||| | |||||| || |||||||||||  || ||||| || ||| ||||| || |||||||| ||| ||    
T  6303753 ggtgattttaccccgcaatattgtttcactccttgactattttccatcatcttctttggctaaaaaacgtcgaaaggggcttaccctcatttggcatgca 6303654  T
Q  156 acaattt 162  Q
    |||||||    
T  6303653 acaattt 6303647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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