View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_high_15 (Length: 332)
Name: NF12944_high_15
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_high_15 |
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| [»] scaffold0054 (5 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38111 - 37798
Alignment:
| Q |
1 |
aatcgggaataataaacaaatagtgtatgggggagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaa |
100 |
Q |
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| T |
38111 |
aatcgggaataataaacaaatagtgtatggggcagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaa |
38012 |
T |
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| Q |
101 |
tatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttg |
200 |
Q |
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| T |
38011 |
tatatccgaaaagtaaaatagaaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttg |
37912 |
T |
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| Q |
201 |
tgttgatgaagaagaaatcactgcctgcaacaaatgcaatggtgagttcatttagagaataaatcaactatgtgtacacctcaaataaatttcttagaag |
300 |
Q |
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| T |
37911 |
tgttgatgaagaagaaaccactccctgcaacaaatgcaatggtgagttcatctagagaataaatcaactatgtgtatacctcaaataaatttcttagaag |
37812 |
T |
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| Q |
301 |
ttgtgtttcaagct |
314 |
Q |
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|||| |||| |||| |
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| T |
37811 |
ttgtatttctagct |
37798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 41023 - 40812
Alignment:
| Q |
33 |
gagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagatt |
132 |
Q |
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| T |
41023 |
gagaagaaattctcatatattttttgaagagacaaaaaaacttgtgttaactattaggagattgaaaacatttacaaaaattaaaaaagaaaaggagatt |
40924 |
T |
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| Q |
133 |
gagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaaca |
232 |
Q |
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| T |
40923 |
gagaaggttagaggttacttagggttaggattgcaatttgcaagcaaagttcgattctcttcgtgtcgtgtcgatggagaacaaatcaacggctgcaaca |
40824 |
T |
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| Q |
233 |
aatgcaatggtg |
244 |
Q |
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| T |
40823 |
aatgcaaaggtg |
40812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 49671 - 49523
Alignment:
| Q |
50 |
tatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggtta |
149 |
Q |
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| T |
49671 |
tatttttttaagagaaaacaaaacatatgttaactattgggagatcgaaaatatttccaaaaggtaaaatagaaaaggagattgagaaggtcattggtta |
49572 |
T |
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| Q |
150 |
cttagggttaggattgcaatttgcaagcaaagttctactctcttcgtct |
198 |
Q |
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| T |
49571 |
cttagggttcagattgcaatatacaagcaaagttcgactctcttcgtct |
49523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 34572 - 34455
Alignment:
| Q |
127 |
gagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcct |
226 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||| ||| |||| |||||||||||||||| | || |
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| T |
34572 |
gagattgagaaggtcagtggttactttgggttaggattgaaatttgcaagcaaagttcgattctcttcatctcgtgtcgatgaagaagaaatcagcggct |
34473 |
T |
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| Q |
227 |
gcaacaaatgcaatggtg |
244 |
Q |
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| T |
34472 |
gcaacaaatgcaaaggtg |
34455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 229 - 322
Target Start/End: Complemental strand, 49520 - 49427
Alignment:
| Q |
229 |
aacaaatgcaatggtgagttcatttagagaataaatcaactatgtgtacacctcaaataaatttcttagaagttgtgtttcaagctcgtctgtg |
322 |
Q |
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| T |
49520 |
aacaaatgcaaaggtgagctcatctagagaagaagtcaactatgtgtatacctcaaataaatttcttagaagttgtgtttcaagctcgtctgtg |
49427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 13338974 - 13339124
Alignment:
| Q |
89 |
ggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctact |
188 |
Q |
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|||||| |||||||| ||| || | ||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| | | ||| |
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| T |
13338974 |
ggagattgaaaatatttccaaacattaaaaaagaaaaggagattgagaaggttagtggttacttagggttagaattgcaatttgcaagtaaaatccgact |
13339073 |
T |
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| Q |
189 |
ctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaa |
239 |
Q |
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| T |
13339074 |
ctcttcgtctcgtgtcgatggagaagaaatcagaggctgcaacaattgcaa |
13339124 |
T |
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