View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_high_16 (Length: 318)
Name: NF12944_high_16
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 30456368 - 30456079
Alignment:
| Q |
12 |
aacctgtgcaccctacaactgatagctctctaaaacagccaaggaacgataatccggattagccacgcaaacaaaaacgcggattccaacaccattcgta |
111 |
Q |
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|||||| |||||||||| |||| |||||||||| ||| ||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30456368 |
aacctgagcaccctacagctgacagctctctaacacacccaaggaacgatattctggattagccacgcaaacaaaaatgcggattccaacaccattcgta |
30456269 |
T |
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| Q |
112 |
cgtaaaacaaacaagtctctatcttcaatctatccaaactccattgccacgc-agaactttgattcgatccaccacctcttgtgtctctgaagtcttgct |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
30456268 |
----aaataaacaagtctctatcttcaatctatccaaactccattgccacgctagaactttgatttgatccaccacctcttgcgtctctgaagtcttgct |
30456173 |
T |
|
| Q |
211 |
attgaaaattctatcattcctagacttccaaaccccccacaccaccgcatgccaaatcaaccacgccgctcttcgtaatttcttcgagcccact |
304 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30456172 |
attgaaaattctatcattcctagacttccaaacccctcacaccaccgcatgccaaatcaaccacgccgctcttcgtaatttcttcgagcccact |
30456079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 20988971 - 20988929
Alignment:
| Q |
235 |
cttccaaaccccccacaccaccgcatgccaaatcaaccacgcc |
277 |
Q |
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| T |
20988971 |
cttccaaaccacccaaaccaccgcatgccaaatcaaccacgcc |
20988929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 21218504 - 21218455
Alignment:
| Q |
227 |
ttcctagacttccaaaccccccacaccaccgcatgccaaatcaaccacgc |
276 |
Q |
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| T |
21218504 |
ttcctagacctccaaaccacccacaccaccgcatgccaaatgatccacgc |
21218455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 5746046 - 5745973
Alignment:
| Q |
201 |
aagtcttgctattgaaaattctatcattcctagacttccaaaccccccacaccaccgcatgccaaatcaaccac |
274 |
Q |
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| T |
5746046 |
aagtcttattattgaaaatcatattgttcctagacttccaaatcacccacactaccgcgtgccaaatcaaccac |
5745973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 5783005 - 5782932
Alignment:
| Q |
201 |
aagtcttgctattgaaaattctatcattcctagacttccaaaccccccacaccaccgcatgccaaatcaaccac |
274 |
Q |
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| T |
5783005 |
aagtcttattattgaaaatcatattgttcctagacttccaaatcacccacactaccgcgtgccaaatcaaccac |
5782932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 5746172 - 5746106
Alignment:
| Q |
72 |
agccacgcaaacaaaaacgcggattccaacaccattcgtacgtaaaacaaacaagtctctatcttcaatct |
142 |
Q |
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| T |
5746172 |
agccatgcaaacaaaaccgagggttccaacaccattcata----aaacaaacaagtctctatattcaatct |
5746106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 5783131 - 5783065
Alignment:
| Q |
72 |
agccacgcaaacaaaaacgcggattccaacaccattcgtacgtaaaacaaacaagtctctatcttcaatct |
142 |
Q |
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| T |
5783131 |
agccatgcaaacaaaaccgagggttccaacaccattcata----aaacaaacaagtctctatattcaatct |
5783065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 20040422 - 20040479
Alignment:
| Q |
212 |
ttgaaaattctatcattcctagacttccaaaccccccacaccaccgcatgccaaatca |
269 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |
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| T |
20040422 |
ttgaaaattctatcattcctagctcgccaaatactccacaccaccgcatgccaaatca |
20040479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 3678401 - 3678462
Alignment:
| Q |
212 |
ttgaaaattctatcattcctagacttccaaaccccccacaccaccgcatgccaaatcaacca |
273 |
Q |
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|||||||| |||||||||| | |||||||| | ||| ||||||||||||||||||||||| |
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| T |
3678401 |
ttgaaaatcctatcattccgcgccttccaaatcgtccataccaccgcatgccaaatcaacca |
3678462 |
T |
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