View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12944_high_2 (Length: 726)

Name: NF12944_high_2
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12944_high_2
NF12944_high_2
[»] chr2 (1 HSPs)
chr2 (1-716)||(43635935-43636652)


Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Complemental strand, 43636652 - 43635935
Alignment:
Q  1 aggtttctctgatgctattgatgagtcttctaagaaatggagtttttctatgaatgatggatctgaaggaggtagtttgttctcgccaagaggagggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636652 aggtttctctgatgctattgatgagtcttctaagaaatggagtttctctatgaatgatggatctgaaggaggtagtttgttctcgccaagaggagggaat 43636553  T
Q  101 gttggaaaacctcttgctggtttagagactcaaactaatattcaaaagattaatacaaatgcaacaaaaaacatcaaagaggttcttcatcaatctgtac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636552 gttggaaaacctcttgctggtttagagactcaaactaatattcaaaagattaatacaaatgcaacaaaaaacatcaaagaggttcttcatcaatctgtac 43636453  T
Q  201 atgaaaagaataaacaggtttctggaacaaatgagcatgctaatgctcctgctgcaaagtatgtttatttacatcatccttcttattgtttttagatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636452 atgaaaagaataaacaggtttctggaacaaatgagcatgctaatgctcctgctgcaaagtatgtttatttacatcatccttcttattgtttttagatttt 43636353  T
Q  301 acaattgcttagttctgttctgtttagnnnnnnngagtcat-ttttgttcatttcataatcaactaaatcatggaacatgtttgtaaacaagtttgatat 399  Q
    |||||||||||||||||||||||||||       |||| || ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  43636352 acaattgcttagttctgttctgtttagtttttttgagtaatcttttgttcattgcataatcaactaaatcatggaacatgttgataaacaagtttgatat 43636253  T
Q  400 agatcatgtcatgttttggttggctagattagacaaaggtgaaagatattgtaactcataaaaaactagacatgttactg-nnnnnnnnaatggctttat 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  43636252 agatcatgtcatgttttggttggctagattagacaaaggtgaaagatattgtaactcataaaaaactagacatgttactgtttttttttaatggctttat 43636153  T
Q  499 gttctgtgattcaacccttcaatagacatgannnnnnnnnnnnnggggtgagttttagttagatatattttcttatgcaaaaattgaatttttctatata 598  Q
    |||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636152 gttctgtgattcaacccttcaatagacatgatttttttctttttggggtgagttttagttagatatattttcttatgcaaaaattgaatttttctatata 43636053  T
Q  599 taattcaaaaatagtggctaatgaatttttgggttgttttcagaaaaggcctcatcttcaaagttgttaaacttatgtgttcttcattgtatcaaacttc 698  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636052 taattcaaaaatagtggcttatgaatttttgggttgttttcagaaaaggtctcatcttcaaagttgttaaacttatgtgttcttcattgtatcaaacttc 43635953  T
Q  699 tgtaatagggcacaggtt 716  Q
    ||||||||||||||||||    
T  43635952 tgtaatagggcacaggtt 43635935  T

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