View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_high_25 (Length: 245)
Name: NF12944_high_25
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_high_25 |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 13391565 - 13391803
Alignment:
| Q |
9 |
tactcacaatattgctttggagatttgatgnnnnnnn-ttatcatattgaagttttgatgtctaagcattctcaaacaactcgtaacttgtatctaaggt |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13391565 |
tactcacaatattgctttggagatttgatgaaacaaaattatcatattgaagttttgatgtctaagcattcccaaacaactcgtaacttgtatctaaggt |
13391664 |
T |
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| Q |
108 |
ggttgacgacctcacttgattgcattcaacttctatttaaatgacgatt-ccttttcgcggccgtggtgaaccagtagaattttctaataaaggaaactt |
206 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||| || |||| || |||||||| |||||||||||| |||||| |||||||||||||||||| |
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| T |
13391665 |
ggttgacggcctcacttgattgcattcaacttctattgaaacgaggattcccctttcgcggtcgtggtgaaccaatagaatcttctaataaaggaaactt |
13391764 |
T |
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| Q |
207 |
tcttgatatgcttagatggtttgctaacagaaaaaagaa |
245 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
13391765 |
ccttgatatgcttagatggtttgctaacaaaaaaaagaa |
13391803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 13378950 - 13379130
Alignment:
| Q |
50 |
catattgaagttttgatgtctaagcattctcaaacaactcgtaacttgtatctaaggtggttgacgacctcacttgattgcattcaacttctatttaaat |
149 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| ||||| ||||||| ||| ||||||||| || |
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| T |
13378950 |
catattgaagttttgatgtctaaccattctcaaacaactcataacttgtattgaaggtggttgacagcctcaattgattgtattatacttctattgaagc |
13379049 |
T |
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| Q |
150 |
gacgatt-ccttttcgcggccgtggtgaaccagtagaattttctaataaaggaaactttcttgatatgcttagatggtttg |
229 |
Q |
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|| |||| |||||||| || |||| |||| || |||||| || |||| |||||||||||||||| |||||||||||||||| |
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| T |
13379050 |
gatgattcccttttcgtggtcgtgatgaatcaatagaatcttataatcaaggaaactttcttgaaatgcttagatggtttg |
13379130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 4814466 - 4814659
Alignment:
| Q |
50 |
catattgaagttttgatgtctaagcattctcaaacaactcgtaacttgtatctaaggtggttgacgacctcacttgattgcattcaacttctatttaaat |
149 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| | | |||| |||||||||||||||||||||| |||| |||| |||| || |
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| T |
4814466 |
catattgaaggtttgatgtctaagcattctcaaacaactcgtaacttgaaccgaaggcggttgacgacctcacttgattgtattcgacttgtattgaagc |
4814565 |
T |
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| Q |
150 |
gacgatt-ccttttcgcggccgtggtgaaccagtagaattttctaataaaggaaactttcttgatatgcttagatggtttgctaacagaaaaaa |
242 |
Q |
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| T |
4814566 |
aaggattgccctttcgtggtcatgatgaaaaaatagaatcttctaatcaaggaaacttccttgaattgcttagatggtttgctaagagaaaaaa |
4814659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 19141641 - 19141837
Alignment:
| Q |
50 |
catattgaagttttgatgtctaagcattctcaaacaactcgtaacttgtatctaaggtggttgacgacctcacttgattgcattcaacttctatttaaat |
149 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||||| |||| ||||||||| || |
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| T |
19141641 |
catattgaaggtttgatgtctaagcattctcaaacaactcgtaacttgtaccgaaggcggttgacggcctcacttgattgtattcgacttctattgaagc |
19141740 |
T |
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| Q |
150 |
gacgattcct-tttcgcggccgtggtgaaccagtagaattttctaataaaggaaactttcttgatatgcttagatggtttgctaacagaaaaaagaa |
245 |
Q |
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| T |
19141741 |
aaggattgctctttcgtggtcatgatgaaaaaatagaatcttctaatcaaggaaacttccttgaattgcttagatggtttgctaagagaaaaaagaa |
19141837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 29637082 - 29637278
Alignment:
| Q |
50 |
catattgaagttttgatgtctaagcattctcaaacaactcgtaacttgtatctaaggtggttgacgacctcacttgattgcattcaacttctatttaaat |
149 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||||| |||| ||||||||| || |
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| T |
29637082 |
catattgaaggtttgatgtctaagcattctcaaacaactcgtaacttgtaccgaaggcggttgacggcctcacttgattgtattcgacttctattgaagc |
29637181 |
T |
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| Q |
150 |
gacgatt-ccttttcgcggccgtggtgaaccagtagaattttctaataaaggaaactttcttgatatgcttagatggtttgctaacagaaaaaagaa |
245 |
Q |
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| |||| | ||||| || | || |||| | |||||| ||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||||| |
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| T |
29637182 |
aaggattgtcctttcgtggtcatgatgaaaaaatagaatcttctaatcaaggaaacttccttgaattgcttagatggtttgctaagagaaaaaagaa |
29637278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 242
Target Start/End: Complemental strand, 677476 - 677283
Alignment:
| Q |
50 |
catattgaagttttgatgtctaagcattctcaaacaactcgtaacttgtatctaaggtggttgacgacctcacttgattgcattcaacttctatttaaat |
149 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| | | |||| |||||||||||||||||||||| |||| |||| |||| || |
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| T |
677476 |
catattgaaggtttgatgtctaagcattctcaaacaactcgtaacttgaaccgaaggcggttgacgacctcacttgattgtattcgacttgtattgaagc |
677377 |
T |
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| Q |
150 |
gacgatt-ccttttcgcggccgtggtgaaccagtagaattttctaataaaggaaactttcttgatatgcttagatggtttgctaacagaaaaaa |
242 |
Q |
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| |||| || ||||| || | || |||| | |||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
677376 |
aaggattgccctttcgtggtcatgatgaaaaaatagaatcttctaatcaaggaaacttccttgaattgcttagatggtttgctaagagaaaaaa |
677283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 242
Target Start/End: Original strand, 2532156 - 2532345
Alignment:
| Q |
53 |
attgaagttttgatgtctaagcattctcaaacaactcgtaacttgtatctaaggtggttgacgacctcacttgattgcattcaacttctatttaaatgac |
152 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||| ||||| |||| |||||||| ||||| ||||| | ||| || |||||| || | |
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| T |
2532156 |
attgaagttttgatgtcctagcattctgaaacaactcgtaact-gtatcgaaggcggttgacggtctcacatgatttccttcgacctctattaaagcaat |
2532254 |
T |
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| Q |
153 |
gattc-cttttcgcggccgtggtgaaccagtagaattttctaataaaggaaactttcttgatatgcttagatggtttgctaacagaaaaaa |
242 |
Q |
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|||| ||||||| || | || |||| || |||||| ||||||| || |||| |||||||| |||||||||||||||||||| |||||||| |
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| T |
2532255 |
gattgtcttttcgtggtcttgatgaatcaatagaatcttctaatcaaagaaattttcttgaaatgcttagatggtttgctaaaagaaaaaa |
2532345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 30867889 - 30867795
Alignment:
| Q |
50 |
catattgaagttttgatgtctaagcattctcaaacaactcgtaacttgtatctaaggtggttgacgacctcacttgattgcattcaacttctatt |
144 |
Q |
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|||||||||||| || |||||||| | ||| ||||||||||| | ||||||| |||| ||||||| | || ||||||||| |||| ||||||| |
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| T |
30867889 |
catattgaagttgtgctgtctaagtagtctgaaacaactcgtgaattgtatcgaaggcagttgacggcttcccttgattgccttcactttctatt |
30867795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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