View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12944_high_3 (Length: 665)

Name: NF12944_high_3
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12944_high_3
NF12944_high_3
[»] scaffold0070 (3 HSPs)
scaffold0070 (219-588)||(17937-18304)
scaffold0070 (19-64)||(17704-17749)
scaffold0070 (107-171)||(17790-17858)
[»] chr8 (36 HSPs)
chr8 (219-560)||(24913901-24914240)
chr8 (229-485)||(25694335-25694593)
chr8 (219-460)||(25645980-25646216)
chr8 (329-528)||(25603538-25603733)
chr8 (107-247)||(25321864-25322004)
chr8 (107-259)||(25603783-25603951)
chr8 (107-177)||(25799570-25799640)
chr8 (107-177)||(25646296-25646369)
chr8 (11-64)||(25694742-25694795)
chr8 (107-177)||(25489474-25489547)
chr8 (107-177)||(24913747-24913821)
chr8 (11-64)||(25489590-25489643)
chr8 (11-64)||(25646412-25646465)
chr8 (16-64)||(24913658-24913706)
chr8 (587-650)||(25385478-25385542)
chr8 (107-166)||(25694637-25694699)
chr8 (173-222)||(24913832-24913881)
chr8 (11-49)||(25322060-25322098)
chr8 (172-222)||(25646236-25646286)
chr8 (173-222)||(25489414-25489463)
chr8 (11-64)||(25604000-25604053)
chr8 (11-48)||(25799658-25799695)
chr8 (585-617)||(38711969-38712001)
chr8 (582-617)||(4335011-4335046)
chr8 (363-402)||(15349991-15350030)
chr8 (586-617)||(25653701-25653732)
chr8 (583-617)||(2873443-2873477)
chr8 (587-617)||(13572538-13572568)
chr8 (588-617)||(2873794-2873823)
chr8 (588-617)||(9305409-9305438)
chr8 (584-617)||(23389368-23389401)
chr8 (551-588)||(25694280-25694317)
chr8 (588-617)||(34227326-34227355)
chr8 (588-617)||(36343145-36343174)
chr8 (588-616)||(13558497-13558525)
chr8 (114-150)||(25714483-25714519)
[»] scaffold1281 (1 HSPs)
scaffold1281 (226-375)||(975-1126)
[»] scaffold0526 (1 HSPs)
scaffold0526 (226-375)||(11192-11343)
[»] chr2 (6 HSPs)
chr2 (581-617)||(38127755-38127791)
chr2 (586-617)||(36525621-36525652)
chr2 (580-617)||(28781968-28782005)
chr2 (589-617)||(22846013-22846041)
chr2 (589-617)||(24226683-24226711)
chr2 (589-617)||(31989350-31989378)
[»] chr7 (7 HSPs)
chr7 (583-617)||(21444212-21444246)
chr7 (586-617)||(12005261-12005292)
chr7 (587-617)||(20164452-20164482)
chr7 (588-617)||(442881-442910)
chr7 (588-617)||(24478023-24478052)
chr7 (585-617)||(22718588-22718620)
chr7 (589-617)||(41380733-41380761)
[»] chr5 (9 HSPs)
chr5 (584-617)||(12148255-12148288)
chr5 (585-617)||(4413923-4413955)
chr5 (586-617)||(25962799-25962830)
chr5 (586-617)||(31312800-31312831)
chr5 (588-618)||(6117586-6117616)
chr5 (587-617)||(37082303-37082333)
chr5 (588-617)||(21039864-21039893)
chr5 (585-617)||(16920685-16920717)
chr5 (589-617)||(31920060-31920088)
[»] chr3 (6 HSPs)
chr3 (226-375)||(11971280-11971431)
chr3 (581-617)||(25024531-25024567)
chr3 (588-617)||(14826104-14826133)
chr3 (588-617)||(38703331-38703360)
chr3 (589-617)||(23626266-23626294)
chr3 (589-617)||(26769921-26769949)
[»] scaffold0129 (1 HSPs)
scaffold0129 (587-618)||(30719-30750)
[»] chr6 (2 HSPs)
chr6 (586-617)||(10545828-10545859)
chr6 (588-617)||(8238005-8238034)
[»] chr1 (6 HSPs)
chr1 (587-617)||(10611791-10611821)
chr1 (587-617)||(26399203-26399233)
chr1 (588-617)||(27666261-27666290)
chr1 (588-617)||(31883452-31883481)
chr1 (588-617)||(37268825-37268854)
chr1 (585-617)||(8930375-8930407)
[»] chr4 (9 HSPs)
chr4 (588-617)||(19909354-19909383)
chr4 (588-617)||(29104158-29104187)
chr4 (588-617)||(31226528-31226557)
chr4 (584-617)||(31857236-31857269)
chr4 (588-616)||(3652270-3652298)
chr4 (589-617)||(7913459-7913487)
chr4 (589-617)||(14121590-14121618)
chr4 (589-617)||(27627011-27627039)
chr4 (585-617)||(46088425-46088457)
[»] scaffold0085 (1 HSPs)
scaffold0085 (589-617)||(25290-25318)
[»] scaffold0022 (1 HSPs)
scaffold0022 (589-617)||(63378-63406)
[»] scaffold0004 (1 HSPs)
scaffold0004 (589-617)||(212513-212541)


Alignment Details
Target: scaffold0070 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 219 - 588
Target Start/End: Original strand, 17937 - 18304
Alignment:
Q  219 aggttgctacataattgtgcagaaaaatatagttggacatgt--gttatcattgtggagatttgtataatcaaatttgatttgtactttaagctcaaggt 316  Q
    |||||||||||||||||||||||||||||||| |||||||||  |||||||||||||| |  |||||||||||||||||||| |||||||||||||||||    
T  17937 aggttgctacataattgtgcagaaaaatatagctggacatgtttgttatcattgtggatacatgtataatcaaatttgatttttactttaagctcaaggt 18036  T
Q  317 tattgaagtatattaagaagcctaagggacgacttggacaaaaacgaagatgatatttcttttcttaccaagtttctcaagctttatgtctttaatatag 416  Q
    | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  18037 tgttgaagtatattaagaagcttaaaggacgacttggacaaaaacgaagatgatatttcctttcttaccaagtttctcaagccttatgtctttaatatag 18136  T
Q  417 tttagagaagcttcaagtttctcaaatgtctctaatataatttttaagatgtggtgttactaattgaattaatgattatgaagatgttcatagacatatt 516  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    |||||| ||||||||| |||||||||||||    
T  18137 tttagagaagcttcaagtttctcaaatgtctctaatataattttcaagatgtggtgttgctaattg----aatgatgatgaagatggtcatagacatatt 18232  T
Q  517 aaaggccaaagagcataaaagtaaataagatcccaagacaaggatgggggtttcaaattcactatttttaaa 588  Q
     || ||||||||| |||||||| || |||| ||||||||||||||| | ||||||||||||||||| |||||    
T  18233 caaagccaaagaggataaaagtcaagaagagcccaagacaaggatgagtgtttcaaattcactattcttaaa 18304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 17704 - 17749
Alignment:
Q  19 catgtaaatcgtgtgtactgtatccatttatgtagtatcccctctc 64  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  17704 catgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 17790 - 17858
Alignment:
Q  107 ggtgcagtctttggaggagagtagtgagggtcttga----ctcattgtataagaatgggaagaaaagat 171  Q
    ||||||||| |||||||| |||||||||||||||||    |||||||| ||||||||||||||||||||    
T  17790 ggtgcagtccttggaggaaagtagtgagggtcttgattgactcattgtgtaagaatgggaagaaaagat 17858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 219 - 560
Target Start/End: Original strand, 24913901 - 24914240
Alignment:
Q  219 aggttgctacataattgtgcagaaaaatatagttggacatgt--gttatcattgtggagatttgtataatcaaatttgatttgtactttaagctcaaggt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |  | ||||||||||||| ||||||||||||||||||||||    
T  24913901 aggttgctacataattgtgcagaaaaatatagttggacatgtttgttatcattgtggatacatttataatcaaattttatttgtactttaagctcaaggt 24914000  T
Q  317 tattgaagtatattaagaagcctaagggacgacttggacaaaaacgaagatgatatttcttttcttaccaagtttctcaagctttatgtctttaatatag 416  Q
    | |||||||||||||||||||||||||||| |||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24914001 tgttgaagtatattaagaagcctaagggacaacttggacaaaaagtgagatgatatttcctttcttaccaagtttctcaagctttatgtctttaatatag 24914100  T
Q  417 tttagagaagcttcaagtttctcaaatgtctctaatataatttttaagatgtggtgttactaattgaattaatgattatgaagatgttcatagacatatt 516  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    |||||| ||||||||| |||||||||||||    
T  24914101 tttagagaagcttcaagtttctcaaatgtctctaatataattttcaagatgtggtgttgctaattg----aatgatgatgaagatggtcatagacatatt 24914196  T
Q  517 aaaggccaaagagcataaaagtaaataagatcccaagacaagga 560  Q
    ||| ||||||||| ||| |||| || |||| |||| ||||||||    
T  24914197 aaaagccaaagaggatacaagtcaagaagagcccaggacaagga 24914240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 229 - 485
Target Start/End: Complemental strand, 25694593 - 25694335
Alignment:
Q  229 ataattgtgcagaaaaatatagttggacatgt--gttatcattgtggagatttgtataatcaaatttgatttgtactttaagctcaaggttattgaagta 326  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||| |  ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  25694593 ataattgtgcagaaaaatatcgttggacatgtttgttatcattgtggatacatgtataatcaaattttatttgtactttaagctcaaggttgttgaagta 25694494  T
Q  327 tattaagaagcctaagggacgacttggacaaaaacgaagatgatatttcttttcttaccaagtttctcaagctttatgtctttaatatagtttagagaag 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  25694493 tattaagaagcctaagggacgacttggacaaaaacgaagatgatatttcctttcttaccaagtttctcaagctataagtctttaatatagtttagagaag 25694394  T
Q  427 cttcaagtttctcaaatgtctctaatataatttttaagatgtggtgttactaattgaat 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25694393 cttcaagtttctcaaatgtctctaatataatttttaagatgtggtgttactaattgaat 25694335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 219 - 460
Target Start/End: Complemental strand, 25646216 - 25645980
Alignment:
Q  219 aggttgctacataattgtgcagaaaaatatagttggacatgt--gttatcattgtggagatttgtataatcaaatttgatttgtactttaagctcaaggt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||          |||||||||||| ||||||||||||||||||||||    
T  25646216 aggttgctacataattgtgcagaaaaatatagttggacatgtttgttatcattgt----------ataatcaaattttatttgtactttaagctcaaggt 25646127  T
Q  317 tattgaagtatattaagaagcctaagggacg---acttggacaaaaacgaagatgatatttcttttcttaccaagtttctcaagctttatgtctttaata 413  Q
    | ||||||||||||||||||||||||| |||   |||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25646126 tgttgaagtatattaagaagcctaaggaacggagacttagacaaaaactgagatgatatttcctttcttaccaagtttctcaagctttatgtctttaata 25646027  T
Q  414 tagtttagagaagcttcaagtttctcaaatgtctctaatataatttt 460  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  25646026 tagtttagagaagcttcaagttcctcaaatgtctctaatataatttt 25645980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 329 - 528
Target Start/End: Complemental strand, 25603733 - 25603538
Alignment:
Q  329 ttaagaagcctaagggacgacttggacaaaaacgaagatgatatttcttttcttaccaagtttctcaagctttatgtctttaatatagtttagagaagct 428  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||  ||||||||||| ||||||||    
T  25603733 ttaacaagcctaagggacgacttagacaaaaacgaagatgatatttcctttcttaccaagtttcttaagctttatgtccctaatatagttttgagaagct 25603634  T
Q  429 tcaagtttctcaaatgtctctaatataatttttaagatgtggtgttactaattgaattaatgattatgaagatgttcatagacatattaaaggccaaaga 528  Q
    | |||||||||||||||||||||||||||||| ||||||||||||| |||||||    |||||| |||||||||||||||||||||||||||||| ||||    
T  25603633 ttaagtttctcaaatgtctctaatataattttcaagatgtggtgttgctaattg----aatgatgatgaagatgttcatagacatattaaaggcccaaga 25603538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 25322004 - 25321864
Alignment:
Q  107 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtataagaatgggaagaaaagatcttctaatcagcttttggttgaatatttctgcctt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  25322004 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttctaatcagtttttggttgaatatatctgcctt 25321905  T
Q  207 ttatgtcatagcaggttgctacataattgtgcagaaaaata 247  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  25321904 ttatgtcatagcaggttgctacataattttgcagaaaaata 25321864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 25603951 - 25603783
Alignment:
Q  107 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtataagaatgggaagaaaagatc---------------ttctaatcag-cttttggt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||               ||||||||||  |||||||    
T  25603951 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagttttttggt 25603852  T
Q  191 tgaatatttctgccttttatgtcatagcaggttgctacataattgtgcagaaaaatatagttggacatg 259  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||  |||||||||    
T  25603851 tgaatatttctgccttttttgtcatagtaggttgctacataattgtgcataaaaatatttttggacatg 25603783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 25799640 - 25799570
Alignment:
Q  107 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtataagaatgggaagaaaagatcttcta 177  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  25799640 ggtgcagtctttggaggagagtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttcta 25799570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 25646369 - 25646296
Alignment:
Q  107 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtataagaatgggaagaaaagatcttcta 177  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25646296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25694795 - 25694742
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgtagtatcccctctc 64  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25694795 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 25489547 - 25489474
Alignment:
Q  107 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtataagaatgggaagaaaagatcttcta 177  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||| ||||||| ||||||||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttcta 25489474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 24913747 - 24913821
Alignment:
Q  107 ggtgcagtctttggaggagagtagtgagggtcttga----ctcattgtataagaatgggaagaaaagatcttcta 177  Q
    |||||||||||||||||| ||||||||| |||||||    |||||||| ||||||||||||||||||||||||||    
T  24913747 ggtgcagtctttggaggaaagtagtgagcgtcttgattgactcattgtgtaagaatgggaagaaaagatcttcta 24913821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25489643 - 25489590
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgtagtatcccctctc 64  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  25489643 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25646465 - 25646412
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgtagtatcccctctc 64  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  25646465 cacaaaagcatgtaaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24913658 - 24913706
Alignment:
Q  16 aagcatgtaaatcgtgtgtactgtatccatttatgtagtatcccctctc 64  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  24913658 aagcatgtaaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 587 - 650
Target Start/End: Complemental strand, 25385542 - 25385478
Alignment:
Q  587 aagggttaatagtgttttaccccct-gtaataatttcaagcttaaaatcattttccacatatatg 650  Q
    |||||||||||||| |||| ||||| ||||||||| |||||||||||| ||||||||||||||||    
T  25385542 aagggttaatagtgctttatccccttgtaataattccaagcttaaaattattttccacatatatg 25385478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  107 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtataagaatgggaagaa 166  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||| |||||||||||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 24913832 - 24913881
Alignment:
Q  173 ttctaatcagcttttggttgaatatttctgccttttatgtcatagcaggt 222  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  24913832 ttctaatcagtttttggttgaatatttctgtcttttatgttatagcaggt 24913881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 25322098 - 25322060
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttat 49  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  25322098 cacagaagcatgtaaattgtgtgtactgtatccatttat 25322060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 25646286 - 25646236
Alignment:
Q  172 cttctaatcagcttttggttgaatatttctgccttttatgtcatagcaggt 222  Q
    ||||||||||| |||| |||||||||||||| ||||||||| |||||||||    
T  25646286 cttctaatcagtttttagttgaatatttctgtcttttatgttatagcaggt 25646236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 25489463 - 25489414
Alignment:
Q  173 ttctaatcagcttttggttgaatatttctgccttttatgtcatagcaggt 222  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||| |||||    
T  25489463 ttctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggt 25489414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25604053 - 25604000
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgtagtatcccctctc 64  Q
    ||||||||||||||||||||||||||| ||||||| ||| | |||| |||||||    
T  25604053 cacagaagcatgtaaatcgtgtgtactatatccatatatattgtataccctctc 25604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 25799695 - 25799658
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccattta 48  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  25799695 cacagaagcatgtaaatggtgtgtactgtatccattta 25799658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 617
Target Start/End: Complemental strand, 38712001 - 38711969
Alignment:
Q  585 taaagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||||    
T  38712001 taaagggttaatagtgttttaccccctgtaata 38711969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 617
Target Start/End: Complemental strand, 4335046 - 4335011
Alignment:
Q  582 ttttaaagggttaatagtgttttaccccctgtaata 617  Q
    |||| |||||||||||||||||||||||||||||||    
T  4335046 tttttaagggttaatagtgttttaccccctgtaata 4335011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 15349991 - 15350030
Alignment:
Q  363 aagatgatatttcttttcttaccaagtttctcaagcttta 402  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  15349991 aagatgagatttcttttcttaccaaatttctcaagcttta 15350030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 617
Target Start/End: Original strand, 25653701 - 25653732
Alignment:
Q  586 aaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||||    
T  25653701 aaagggttaatagtgttttaccccctgtaata 25653732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 617
Target Start/End: Original strand, 2873443 - 2873477
Alignment:
Q  583 tttaaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||| |||||||||||||||||||    
T  2873443 tttaaagggttaataatgttttaccccctgtaata 2873477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 617
Target Start/End: Original strand, 13572538 - 13572568
Alignment:
Q  587 aagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||    
T  13572538 aagggttaatagtgttttaccccctgtaata 13572568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 2873823 - 2873794
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  2873823 agggttaatagtgttttaccccctgtaata 2873794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 9305409 - 9305438
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  9305409 agggttaatagtgttttaccccctgtaata 9305438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 617
Target Start/End: Complemental strand, 23389401 - 23389368
Alignment:
Q  584 ttaaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||| ||||||||    
T  23389401 ttaaagggttaatagtgttttacccactgtaata 23389368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 588
Target Start/End: Complemental strand, 25694317 - 25694280
Alignment:
Q  551 aagacaaggatgggggtttcaaattcactatttttaaa 588  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  25694317 aagacaaggatgggtgtttcaaattcactattcttaaa 25694280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 34227326 - 34227355
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  34227326 agggttaatagtgttttaccccctgtaata 34227355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 36343145 - 36343174
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  36343145 agggttaatagtgttttaccccctgtaata 36343174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 616
Target Start/End: Original strand, 13558497 - 13558525
Alignment:
Q  588 agggttaatagtgttttaccccctgtaat 616  Q
    |||||||||||||||||||||||||||||    
T  13558497 agggttaatagtgttttaccccctgtaat 13558525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 25714519 - 25714483
Alignment:
Q  114 tctttggaggagagtagtgagggtcttgactcattgt 150  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  25714519 tctttggaggagagtagtgaggctcttgactccttgt 25714483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1281 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1281
Description:

Target: scaffold1281; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 1126 - 975
Alignment:
Q  226 tacataattgtgcagaaaaatatagttggacatgt--gttatcattgtggagatttgtataatcaaatttgatttgtac-tttaagctcaaggttattga 322  Q
    |||||||||| ||||||||| ||||||| ||||||  ||||||| | | ||||| |||||  |||| |||||||||||  |||||| |||||  |  | |    
T  1126 tacataattgagcagaaaaacatagttgaacatgtttgttatcaatttagagatatgtattctcaattttgatttgtaaatttaagatcaagcatggtaa 1027  T
Q  323 agtatattaagaagcctaagggacgacttggacaaaaacgaagatgatatttc 375  Q
    || ||||||||||||||||| || ||||| ||| ||||| |||||||||||||    
T  1026 agaatattaagaagcctaagtgatgacttagac-aaaactaagatgatatttc 975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 11192 - 11343
Alignment:
Q  226 tacataattgtgcagaaaaatatagttggacatgt--gttatcattgtggagatttgtataatcaaatttgatttgtac-tttaagctcaaggttattga 322  Q
    |||||||||| ||||||||| ||||||| ||||||  ||||||| | | ||||  |||||  ||||||||||||||||  |||||| |||||  |  | |    
T  11192 tacataattgagcagaaaaacatagttgaacatgtttgttatcaatttagagacatgtattctcaaatttgatttgtaaatttaagatcaagcatggtaa 11291  T
Q  323 agtatattaagaagcctaagggacgacttggacaaaaacgaagatgatatttc 375  Q
    || ||||||||||||||||| || ||||| ||| ||||| |||||||||||||    
T  11292 agaatattaagaagcctaagtgatgacttagac-aaaactaagatgatatttc 11343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 617
Target Start/End: Original strand, 38127755 - 38127791
Alignment:
Q  581 tttttaaagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||||||||    
T  38127755 tttttaaagggttaatagtgttttaccccctgtaata 38127791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 617
Target Start/End: Complemental strand, 36525652 - 36525621
Alignment:
Q  586 aaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||||    
T  36525652 aaagggttaatagtgttttaccccctgtaata 36525621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 617
Target Start/End: Complemental strand, 28782005 - 28781968
Alignment:
Q  580 atttttaaagggttaatagtgttttaccccctgtaata 617  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  28782005 attttttaagggttaatagtgatttaccccctgtaata 28781968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Original strand, 22846013 - 22846041
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  22846013 gggttaatagtgttttaccccctgtaata 22846041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Complemental strand, 24226711 - 24226683
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  24226711 gggttaatagtgttttaccccctgtaata 24226683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Original strand, 31989350 - 31989378
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  31989350 gggttaatagtgttttaccccctgtaata 31989378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 21444246 - 21444212
Alignment:
Q  583 tttaaagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||||||    
T  21444246 tttaaagggttaatagtgttttaccccctgtaata 21444212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 617
Target Start/End: Original strand, 12005261 - 12005292
Alignment:
Q  586 aaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||||    
T  12005261 aaagggttaatagtgttttaccccctgtaata 12005292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 617
Target Start/End: Complemental strand, 20164482 - 20164452
Alignment:
Q  587 aagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||    
T  20164482 aagggttaatagtgttttaccccctgtaata 20164452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 442910 - 442881
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  442910 agggttaatagtgttttaccccctgtaata 442881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 24478023 - 24478052
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  24478023 agggttaatagtgttttaccccctgtaata 24478052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 617
Target Start/End: Complemental strand, 22718620 - 22718588
Alignment:
Q  585 taaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||| |||||||    
T  22718620 taaagggttaatagtgttttaccccttgtaata 22718588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Complemental strand, 41380761 - 41380733
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  41380761 gggttaatagtgttttaccccctgtaata 41380733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 617
Target Start/End: Complemental strand, 12148288 - 12148255
Alignment:
Q  584 ttaaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||||||    
T  12148288 ttaaagggttaatagtgttttaccccctgtaata 12148255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 617
Target Start/End: Original strand, 4413923 - 4413955
Alignment:
Q  585 taaagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||||    
T  4413923 taaagggttaatagtgttttaccccctgtaata 4413955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 617
Target Start/End: Original strand, 25962799 - 25962830
Alignment:
Q  586 aaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||||    
T  25962799 aaagggttaatagtgttttaccccctgtaata 25962830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 617
Target Start/End: Complemental strand, 31312831 - 31312800
Alignment:
Q  586 aaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||||    
T  31312831 aaagggttaatagtgttttaccccctgtaata 31312800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 618
Target Start/End: Original strand, 6117586 - 6117616
Alignment:
Q  588 agggttaatagtgttttaccccctgtaataa 618  Q
    |||||||||||||||||||||||||||||||    
T  6117586 agggttaatagtgttttaccccctgtaataa 6117616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 617
Target Start/End: Complemental strand, 37082333 - 37082303
Alignment:
Q  587 aagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||    
T  37082333 aagggttaatagtgttttaccccctgtaata 37082303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 21039864 - 21039893
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  21039864 agggttaatagtgttttaccccctgtaata 21039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 617
Target Start/End: Complemental strand, 16920717 - 16920685
Alignment:
Q  585 taaagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||| ||||||||||||||||    
T  16920717 taaagggttaatagtgctttaccccctgtaata 16920685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Original strand, 31920060 - 31920088
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  31920060 gggttaatagtgttttaccccctgtaata 31920088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 11971280 - 11971431
Alignment:
Q  226 tacataattgtgcagaaaaatatagttggacatgt--gttatcattgtggagatttgtataatcaaatttgatttgtac-tttaagctcaaggttattga 322  Q
    |||||||||| ||||||||| ||||||| ||||||  ||||||| | | ||||  |||||  |||| |||||||||||  |||||| |||||  |  | |    
T  11971280 tacataattgagcagaaaaacatagttgaacatgtttgttatcaatttagagacatgtattctcaattttgatttgtaaatttaagatcaagcatggtaa 11971379  T
Q  323 agtatattaagaagcctaagggacgacttggacaaaaacgaagatgatatttc 375  Q
    || ||||||||||||||||| || ||||| ||| ||||| |||||||||||||    
T  11971380 agaatattaagaagcctaagtgatgacttagac-aaaactaagatgatatttc 11971431  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 617
Target Start/End: Original strand, 25024531 - 25024567
Alignment:
Q  581 tttttaaagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||| ||||||||||||||||    
T  25024531 tttttaaagggttaatagtgctttaccccctgtaata 25024567  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 14826133 - 14826104
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  14826133 agggttaatagtgttttaccccctgtaata 14826104  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 38703360 - 38703331
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  38703360 agggttaatagtgttttaccccctgtaata 38703331  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Complemental strand, 23626294 - 23626266
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  23626294 gggttaatagtgttttaccccctgtaata 23626266  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Original strand, 26769921 - 26769949
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  26769921 gggttaatagtgttttaccccctgtaata 26769949  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 618
Target Start/End: Original strand, 30719 - 30750
Alignment:
Q  587 aagggttaatagtgttttaccccctgtaataa 618  Q
    ||||||||||||||||||||||||||||||||    
T  30719 aagggttaatagtgttttaccccctgtaataa 30750  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 617
Target Start/End: Original strand, 10545828 - 10545859
Alignment:
Q  586 aaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||||    
T  10545828 aaagggttaatagtgttttaccccctgtaata 10545859  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 8238034 - 8238005
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  8238034 agggttaatagtgttttaccccctgtaata 8238005  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 617
Target Start/End: Original strand, 10611791 - 10611821
Alignment:
Q  587 aagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||    
T  10611791 aagggttaatagtgttttaccccctgtaata 10611821  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 617
Target Start/End: Complemental strand, 26399233 - 26399203
Alignment:
Q  587 aagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||||    
T  26399233 aagggttaatagtgttttaccccctgtaata 26399203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 27666290 - 27666261
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  27666290 agggttaatagtgttttaccccctgtaata 27666261  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 31883452 - 31883481
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  31883452 agggttaatagtgttttaccccctgtaata 31883481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 37268825 - 37268854
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  37268825 agggttaatagtgttttaccccctgtaata 37268854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 617
Target Start/End: Complemental strand, 8930407 - 8930375
Alignment:
Q  585 taaagggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||| ||||||||||||||||||    
T  8930407 taaagggttaatagagttttaccccctgtaata 8930375  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 19909383 - 19909354
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  19909383 agggttaatagtgttttaccccctgtaata 19909354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 29104158 - 29104187
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  29104158 agggttaatagtgttttaccccctgtaata 29104187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 31226557 - 31226528
Alignment:
Q  588 agggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||||||||||||||||    
T  31226557 agggttaatagtgttttaccccctgtaata 31226528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 617
Target Start/End: Complemental strand, 31857269 - 31857236
Alignment:
Q  584 ttaaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||||| ||||||||||||||||    
T  31857269 ttaaagggttaatagtgctttaccccctgtaata 31857236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 616
Target Start/End: Original strand, 3652270 - 3652298
Alignment:
Q  588 agggttaatagtgttttaccccctgtaat 616  Q
    |||||||||||||||||||||||||||||    
T  3652270 agggttaatagtgttttaccccctgtaat 3652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Complemental strand, 7913487 - 7913459
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  7913487 gggttaatagtgttttaccccctgtaata 7913459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Complemental strand, 14121618 - 14121590
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  14121618 gggttaatagtgttttaccccctgtaata 14121590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Complemental strand, 27627039 - 27627011
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  27627039 gggttaatagtgttttaccccctgtaata 27627011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 617
Target Start/End: Complemental strand, 46088457 - 46088425
Alignment:
Q  585 taaagggttaatagtgttttaccccctgtaata 617  Q
    ||||||||||||||| |||||||||||||||||    
T  46088457 taaagggttaatagtattttaccccctgtaata 46088425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Complemental strand, 25318 - 25290
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  25318 gggttaatagtgttttaccccctgtaata 25290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Complemental strand, 63406 - 63378
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  63406 gggttaatagtgttttaccccctgtaata 63378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Original strand, 212513 - 212541
Alignment:
Q  589 gggttaatagtgttttaccccctgtaata 617  Q
    |||||||||||||||||||||||||||||    
T  212513 gggttaatagtgttttaccccctgtaata 212541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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