View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_1 (Length: 744)
Name: NF12944_low_1
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 685; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 10 - 726
Target Start/End: Complemental strand, 13850189 - 13849473
Alignment:
| Q |
10 |
catcatcaatatcttactatgtcagtctcgtgtcaagtgtctgcatcagtgattcatatatcaatgtcatcaaaacacaaacacatacaaattgaaaccc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13850189 |
catcatcaatatcttactatgtcagtctcgtgtcaagtgtctgcatcagtgattcatatatcaatgtcatcaaaacacaaacacatacaaattgaaaccc |
13850090 |
T |
|
| Q |
110 |
taaatcgcctctattttcttaaagaggagtgctagcaacattttctttccaaaactccctaacattcactatcttattgcatgaaattcatgagggtccc |
209 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13850089 |
aaaatcggttctattttcttaaagaggagtgctagcaacattttctttccaaaactccctaacattcactatcttattgcatgaaattcgtgagggtccc |
13849990 |
T |
|
| Q |
210 |
acacattttagatatgggttctacataaggggatgaaatccacatggatttgtttgaaaaagagtatggctagcattcctctttattaaacatcatctgt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13849989 |
acacattttagatatgggttctacataaggggatgaaatccacatggatttgtttgaaaaagagtatggctagcattcctctttattaaacatcatctgt |
13849890 |
T |
|
| Q |
310 |
atattcgtgtctgcatcggtattccatgcactatgaaacacggatacgaacacccgacaattctaataatttgagagaatcacatgattcatgttaacta |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13849889 |
atattcgtgtctgcatcggtattccatgcactatgaaacacggatacgaacacccaacaattctaataatttgagagaatcacatgattcatgttaacta |
13849790 |
T |
|
| Q |
410 |
tatgtgtgtcggtgtcgtgtggtgttcgagttcgagacaacatgtgtcagacactgagacatgcctaatctaaggagtgttcataattcatacatcaaca |
509 |
Q |
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| T |
13849789 |
tatgtgtgtcggtgtcgtgtggtgttcgagttcgagacaacatgtgtcagacactgagacatgcctaatctaaggagtgttcataattcatacatcaaca |
13849690 |
T |
|
| Q |
510 |
ttatcaaaaccaaaacacaaacacataccgatttaaccttgccaaacttctctccatcctccaaaaaccccttcatcacctctgttctaggatgatgcat |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13849689 |
ttatcaaaaccaaaacacaaacacataccgatttaaccttgccaaacttctctccatcctccaaaaaccccttcatcacctctgttctaggatgatgcat |
13849590 |
T |
|
| Q |
610 |
ccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgccaccggtttctctaacaaa |
709 |
Q |
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| T |
13849589 |
ccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactcacagccaccggcttctctaacaaa |
13849490 |
T |
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| Q |
710 |
acatgcttccccttctt |
726 |
Q |
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||||||||||||||||| |
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| T |
13849489 |
acatgcttccccttctt |
13849473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 493 - 726
Target Start/End: Complemental strand, 13855495 - 13855263
Alignment:
| Q |
493 |
taattcatacatcaacattatcaaaaccaaaacacaaacacataccgatttaaccttgccaaacttctctccatcctccaaaaaccccttcatcacctct |
592 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
13855495 |
taattcatacatcaacattatcaaaac-aaaacacagacacataccgatttaacctttccaaacttctccccatcctccaaaaactccttcatcacctcc |
13855397 |
T |
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| Q |
593 |
gttctaggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgcca |
692 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13855396 |
gttctcggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgcca |
13855297 |
T |
|
| Q |
693 |
ccggtttctctaacaaaacatgcttccccttctt |
726 |
Q |
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| T |
13855296 |
ccggtttctcaagcaacacatgcttccccttctt |
13855263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 635
Target Start/End: Complemental strand, 13760408 - 13760366
Alignment:
| Q |
593 |
gttctaggatgatgcatccacatagtcccatccataaactgca |
635 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||| |
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| T |
13760408 |
gttctaggatgatgcatccacatagtagcatccatatactgca |
13760366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 864282 - 864199
Alignment:
| Q |
133 |
gaggagtgctagcaacattttctttccaaaactccctaacattcactatcttattgcatgaaattcatgagggtcccacacatt |
216 |
Q |
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||||||||||| |||| | |||||| || |||| |||||| ||||| |||||||| ||||||||||| |||| ||||||||| |
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| T |
864282 |
gaggagtgctatgaacactctctttcaaacactctctaacactcactctcttattgggtgaaattcatgtgggtaccacacatt |
864199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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