View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_10 (Length: 470)
Name: NF12944_low_10
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 43636629 - 43637044
Alignment:
| Q |
14 |
tcatcaatagcatcagagaaacctcttttagctccaacactagctacaaggttcttcaaaggagaacaaacattaatgctcttcaaatctttgttggcaa |
113 |
Q |
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| T |
43636629 |
tcatcaatagcatcagagaaacctcttttagctccaacactagctacaaggttcttcaaaggagaacaaacattaatgctcttcaaatctttgttggcaa |
43636728 |
T |
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| Q |
114 |
agaaagagactccaccaacagcaccagcagcagaaactgattttctatcaggagattcacaaccaggtaagcctagtctgagctcagtttccttgaagtt |
213 |
Q |
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| T |
43636729 |
agaaagagactccaccaccagcaccagcagcagaaactgattttctatcaggagattcacaaccaggtaagcctagtctgagctcagtttccttgaagtt |
43636828 |
T |
|
| Q |
214 |
gagagatgaagatgttttgtccattgaaggattatttgctaaacctatgtaatcatgttctaatggtgtagacatgaaaatggctaggtgaaaatatatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43636829 |
gagagatgaagatgttttgtccattgaaggattatttgctaaacctatgtaatcatgttctaatggtgtagacatgaaaatggctaggtgaaaatatatc |
43636928 |
T |
|
| Q |
314 |
aaatattgaacacaagtttaaattattattacttatgatgatagttatagaaaacttagaatgaagagacgagagtatgaaggtgatgttatattattga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43636929 |
aaatattgaacacaagtttaaattattattacttatgatgatagttatagaaaacttagaatgaagagacgagagtatgaaggtgatgttatattattga |
43637028 |
T |
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| Q |
414 |
tatgtatgtactatgt |
429 |
Q |
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| T |
43637029 |
tatgtatgtactatgt |
43637044 |
T |
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