View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_11 (Length: 421)
Name: NF12944_low_11
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 32199019 - 32199419
Alignment:
| Q |
18 |
tgtaatgtatcagagaaaacatcatagttgacaaaattatggtaacattgtgtatagacatagcatggttttattctccccacaactatttatttactca |
117 |
Q |
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| T |
32199019 |
tgtaatgtatcagagaaaacatcatagttgacaaaattatggtaacattgtgtatagacatagcatggttttattgtccccacaactatttatttactca |
32199118 |
T |
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| Q |
118 |
gttatatatatctctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatat |
217 |
Q |
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| T |
32199119 |
gttatatatatctctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatat |
32199218 |
T |
|
| Q |
218 |
atataactaatcttacattgttaggatatatttgtcacaagtttagtttacatattgtaatttcttggtttctatatcaaaaaacatgttct-gttannn |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
32199219 |
atataactaatcttacattgttaggatatatttgtcacaagtttagtttacatattgtaatttcttggtttctatatcaaaaaacatgttttagttattt |
32199318 |
T |
|
| Q |
317 |
nnnncatcaaggatgttgagaaggttattctccaatcatcaagcatgtactatttgttttaaaaactattaaagaaactttcgggatctgtgctgctcct |
416 |
Q |
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| T |
32199319 |
ttttcatcaaggatgttgagaaggttattctccaatcatcaagcatgtactatttgttttaaaaactattaaagaaactttcaggatcagtgttgatcct |
32199418 |
T |
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| Q |
417 |
c |
417 |
Q |
| |
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| T |
32199419 |
c |
32199419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 184 - 417
Target Start/End: Original strand, 32196718 - 32196959
Alignment:
| Q |
184 |
agcttgtctcttttaatttttgcatgataaatatatataactaatcttacattgttaggatatatttgtcacaagtttagtttacatattgtaat----- |
278 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32196718 |
agcttgtctctttaaattattgcatgataaatatatataactaatcttacattgttaagatatatttgtcacaagtttagtttacatattgtaattttta |
32196817 |
T |
|
| Q |
279 |
---ttcttggtttctatatcaaaaaacatgttctgttannnnnnncatcaaggatgttgagaaggttattctccaatcatcaagcatgtactatttgttt |
375 |
Q |
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| T |
32196818 |
cagttcttggtttctatatcaaaaaataggttctgttatttttttcatcaaggatgttgagaaggttattctccaatcatcaaacatgtactaattgttt |
32196917 |
T |
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| Q |
376 |
taaaaactattaaagaaactttcgggatctgtgctgctcctc |
417 |
Q |
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| T |
32196918 |
taaaaactattaaagaacctttcaggatcagtgttgatcctc |
32196959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 32196621 - 32196718
Alignment:
| Q |
30 |
gagaaaacatcatagttgacaaaattatggtaacattgtgta--tagacatagcatggttttattctccccacaactatttatttactcagttatata |
125 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32196621 |
gagaaaacatcatagttgacaaaattatggtaaaattgtgtaaggatatatagcatggttttattctccccacaactatttatttactcagttatata |
32196718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 40401847 - 40401751
Alignment:
| Q |
130 |
tctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatatatataacta |
226 |
Q |
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|||| |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |
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| T |
40401847 |
tctacttttgtttaattgcttttaagacagatacaatttccattttgtattagaagtctgtctctcttaatttttgcatgataaacatatataacta |
40401751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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