View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_12 (Length: 406)
Name: NF12944_low_12
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 198 - 391
Target Start/End: Original strand, 46870464 - 46870657
Alignment:
| Q |
198 |
aagaagtattcaaggtcaccaaccacttctcaagttggagattcttccactttttctttgtattgatgatgagaaaccaagaagcagagtatactctgtt |
297 |
Q |
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| T |
46870464 |
aagaagtattcaaggtcaccaaccacttctcaagttggagattcttccactttttctttgtattgatgatgagaaaccaagaagcagagtatactctgtt |
46870563 |
T |
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| Q |
298 |
tgaggcagaggatactctgttttggttagaataaaaagttaattgtttttagccacttttggccaagcttctctcttttctttttcttgtttct |
391 |
Q |
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| T |
46870564 |
tgaggcagaggatactctgttttggttagaataaaaagttaattgtttttagccacttttggccaagcttctctcttttctttttcttgtttct |
46870657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 46870280 - 46870430
Alignment:
| Q |
14 |
gagagatgaagtaatgagtggaggtaaaaagcaatgggatatggatgaagctgtgaaagctcacatgtcattttgcagaaaattcaaatctaaccctgca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46870280 |
gagagatgaagtaatgagtggaggtaaaaagcaatgggatatggatgaagctgtgaaagctcacatgtcattttgcagaaaattcaaatctaaccctgca |
46870379 |
T |
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| Q |
114 |
gttagagtagcagaaggtatgagacagatgctaagaagaagatcaaatgat |
164 |
Q |
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| T |
46870380 |
gttagagtagcagaaggtatgagacagatgctaagaagaagatcaaatgat |
46870430 |
T |
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