View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_13 (Length: 406)
Name: NF12944_low_13
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 187 - 311
Target Start/End: Complemental strand, 14044617 - 14044493
Alignment:
| Q |
187 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtacttggcattttttcacactctgttagtagaagattaggaactcattcattgc |
286 |
Q |
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| T |
14044617 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtactttgcattttttcacactctgttagtagaagattaggaactcattcattgc |
14044518 |
T |
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| Q |
287 |
agatttcatggaaaaatatatcata |
311 |
Q |
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| T |
14044517 |
agatttcatggaaaaatatatcata |
14044493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 13930482 - 13930401
Alignment:
| Q |
91 |
tatacatgagagtaaaacttaacacaacatgtaagaatctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
172 |
Q |
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| T |
13930482 |
tatacatgagagtaaaacttaacacaacatgtaagaacctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
13930401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 14044329 - 14044249
Alignment:
| Q |
313 |
tgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
393 |
Q |
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| T |
14044329 |
tgtagtttgtgacagactgtcttgttatccacatctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
14044249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 13930147 - 13930070
Alignment:
| Q |
315 |
tagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
393 |
Q |
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| T |
13930147 |
tagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttg-tgtggcgccgccgcctccgtctgtttc |
13930070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 14044663 - 14044622
Alignment:
| Q |
107 |
acttaacacaacatgtaagaatctatcgttaatgtagaattt |
148 |
Q |
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| T |
14044663 |
acttaacacaacatgtaagaatctatcgttaatgtagaattt |
14044622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 13476292 - 13476342
Alignment:
| Q |
122 |
taagaatctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
172 |
Q |
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| T |
13476292 |
taagaatctatcgttaatgtagaattggtttcgcactctgtctgcaacttt |
13476342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 13930405 - 13930348
Alignment:
| Q |
234 |
acttggcattttttcacactctgttagtagaagattaggaactcattcattgcagatt |
291 |
Q |
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| T |
13930405 |
actttgcattttttcactctctgttagtggaagattaagagctcattcattgcagatt |
13930348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 13476233 - 13476285
Alignment:
| Q |
28 |
gtaatacatttttatcttcttccgtgatacatcttcaaagttcacagtcatct |
80 |
Q |
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| T |
13476233 |
gtaatacatttttatctttttccgtggtacatcttcaaagattactgtcatct |
13476285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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