View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12944_low_18 (Length: 311)

Name: NF12944_low_18
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12944_low_18
NF12944_low_18
[»] chr8 (7 HSPs)
chr8 (17-98)||(26174321-26174402)
chr8 (113-207)||(26174241-26174335)
chr8 (113-205)||(26175388-26175480)
chr8 (42-98)||(26175466-26175522)
chr8 (17-96)||(4676218-4676296)
chr8 (17-96)||(4678163-4678241)
chr8 (17-93)||(11080234-11080310)
[»] chr6 (9 HSPs)
chr6 (17-98)||(6860167-6860248)
chr6 (17-98)||(29427398-29427477)
chr6 (17-98)||(14618736-14618818)
chr6 (113-205)||(29427320-29427412)
chr6 (113-205)||(14618804-14618896)
chr6 (35-98)||(10774536-10774599)
chr6 (113-207)||(10774585-10774679)
chr6 (22-96)||(9231574-9231647)
chr6 (132-188)||(6825597-6825653)
[»] chr3 (9 HSPs)
chr3 (18-95)||(19439528-19439605)
chr3 (17-98)||(27825695-27825775)
chr3 (22-96)||(39091336-39091410)
chr3 (113-205)||(19439447-19439539)
chr3 (17-98)||(33785845-33785925)
chr3 (17-98)||(35610883-35610964)
chr3 (25-98)||(8504212-8504284)
chr3 (212-297)||(37511914-37512002)
chr3 (51-98)||(35240333-35240379)
[»] chr7 (8 HSPs)
chr7 (17-98)||(40772873-40772954)
chr7 (17-98)||(35130601-35130681)
chr7 (113-205)||(40772940-40773032)
chr7 (17-98)||(7737366-7737447)
chr7 (22-98)||(48821862-48821938)
chr7 (17-91)||(36647489-36647563)
chr7 (116-188)||(34510691-34510763)
chr7 (116-188)||(34512801-34512873)
[»] chr2 (5 HSPs)
chr2 (20-98)||(12015130-12015208)
chr2 (113-203)||(12015054-12015144)
chr2 (17-96)||(36316286-36316365)
chr2 (17-96)||(6016849-6016926)
chr2 (117-179)||(30866085-30866147)
[»] scaffold0263 (2 HSPs)
scaffold0263 (17-96)||(22967-23046)
scaffold0263 (155-205)||(22888-22938)
[»] chr5 (11 HSPs)
chr5 (17-98)||(25213825-25213905)
chr5 (17-98)||(25277975-25278055)
chr5 (17-98)||(27405308-27405388)
chr5 (11-96)||(31185987-31186070)
chr5 (115-205)||(4730581-4730672)
chr5 (17-96)||(39040541-39040619)
chr5 (17-98)||(43233880-43233961)
chr5 (17-96)||(35309149-35309228)
chr5 (17-93)||(35304678-35304754)
chr5 (116-176)||(41949405-41949465)
chr5 (116-176)||(41951803-41951863)
[»] chr4 (4 HSPs)
chr4 (17-98)||(27510485-27510566)
chr4 (17-98)||(13436436-13436516)
chr4 (113-148)||(13436502-13436537)
chr4 (17-54)||(21215019-21215056)
[»] chr1 (2 HSPs)
chr1 (17-98)||(9905792-9905871)
chr1 (17-98)||(9908183-9908262)
[»] scaffold0017 (1 HSPs)
scaffold0017 (22-98)||(183025-183101)
[»] scaffold0001 (1 HSPs)
scaffold0001 (132-188)||(144750-144806)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 26174402 - 26174321
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26174402 ttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 26174321  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 26174335 - 26174241
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaataat 207  Q
    |||||||||||||||||||||||||| |||||||||  | ||||||| ||||| ||||||||||||| ||| ||||||| ||||||| |||||||    
T  26174335 gtgaatattacaaatgatgaagttatcccactaatgaggttattacaagtatatatactactacaaactagtatctaacatatatctttaataat 26174241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 26175480 - 26175388
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 205  Q
    |||||||||||||||||||||||||| ||||||| || | |||||||  |||| ||||||||||||| ||| ||||||| |||||||||||||    
T  26175480 gtgaatattacaaatgatgaagttatcccactaaaggggttattacaattatatatactactacaaactagtatctaacatatatctctaata 26175388  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 26175522 - 26175466
Alignment:
Q  42 gaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26175522 gaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 26175466  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 4676296 - 4676218
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    |||| |||||||||||||| | |||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||    
T  4676296 ttaggaaacatgatatccacg-aaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaa 4676218  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 4678241 - 4678163
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    |||| |||||||||||||| | |||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||    
T  4678241 ttaggaaacatgatatccacg-aaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaa 4678163  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 11080310 - 11080234
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatatta 93  Q
    |||| ||||||||||||||| ||| |||||||| ||||||   | ||| ||| |||| |||||||||||||||||||    
T  11080310 ttaggaaacatgatatccaatgaaagaatgagaaaaaactcggagaatatttctattaatgataaaagtgaatatta 11080234  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 6860248 - 6860167
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6860248 ttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 6860167  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 29427477 - 29427398
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  29427477 ttagtaaacatgatattcaaggaaggaatgagagaaaacttaaataatgtttgtattg--gataaaagtgaatattacaaat 29427398  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 14618736 - 14618818
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatg-tttgtattgatgataaaagtgaatattacaaat 98  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||    
T  14618736 ttagtaaacatgatatccaaggaaggaatgaaagaaaactcaaataatgttttgtattgatgataaaagtgaacattacaaat 14618818  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 29427412 - 29427320
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 205  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||||||| || |||| |||||||||||||    
T  29427412 gtgaatattacaaatgatgaagttatcccactaatggggttattacaagtatatatactactacaaattagtatttaacatatatctctaata 29427320  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 14618804 - 14618896
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 205  Q
    ||||| |||||||||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  14618804 gtgaacattacaaatgatgaagttatcccactaatggggttattacaagtatatatactactacaaactagtatctaacatatatctctaata 14618896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 10774536 - 10774599
Alignment:
Q  35 aaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10774536 aaggaaagaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 10774599  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 10774585 - 10774679
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaataat 207  Q
    |||||||||||||||||||||||||| |||||||||  | ||||||| ||||| ||| ||||||||| | | ||||||| |||||||||||||||    
T  10774585 gtgaatattacaaatgatgaagttatcccactaatgaggttattacaagtatatatattactacaaactggtatctaacatatatctctaataat 10774679  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 9231647 - 9231574
Alignment:
Q  22 aaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    |||||||||||||  ||||| |||||||||| ||| ||| ||| ||| |||||||||||||||||||||||||||    
T  9231647 aaacatgatatccgtggaag-aatgagagaatactcaaagaatctttctattgatgataaaagtgaatattacaa 9231574  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 6825597 - 6825653
Alignment:
Q  132 aagttataccactaatggagatattacaggtatagatactactacaaattagaatct 188  Q
    ||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||    
T  6825597 aagttatcccactaatggggttattacaagtatatatactactacaaactagtatct 6825653  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 19439605 - 19439528
Alignment:
Q  18 tagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattaca 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19439605 tagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattaca 19439528  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 27825695 - 27825775
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  27825695 ttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaat 27825775  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 39091336 - 39091410
Alignment:
Q  22 aaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||    
T  39091336 aaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgatagaagtgaatattacaa 39091410  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 19439539 - 19439447
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 205  Q
    |||||||||||| ||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| |||| || |||||||||||||    
T  19439539 gtgaatattacagatgatgaagttatcccactaatgggggtattacaagtatatatactactacaaactagtatctgacatatatctctaata 19439447  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 33785925 - 33785845
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||||| |||||||||| |||||||    
T  33785925 ttaggaaacatgatatccaatgaaggaatgagagaaaactcaaacaatctttgtattgatgat-aaagtgaatagtacaaat 33785845  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 35610964 - 35610883
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||| |||  || |||||||||||||| |||| |||||||||    
T  35610964 ttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagaatacttctattgatgataaaattgaaaattacaaat 35610883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 8504212 - 8504284
Alignment:
Q  25 catgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    ||||| ||||| |||||||||||||||||||| ||||||  ||| |||||||||| ||||||||||| ||||||    
T  8504212 catgaaatccatggaaggaatgagagaaaactcaaataagctttctattgatgat-aaagtgaatatcacaaat 8504284  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 37511914 - 37512002
Alignment:
Q  212 tataaactctggtagtatcgcaactgtgcataaaaaa--tctaaaaactgcatttacacatttaaattgtacattcaa-atgtgcaaaa 297  Q
    |||||||| || |||||| |||||  |||||||||||  | |||||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  37511914 tataaactgtgatagtattgcaaccatgcataaaaaaaatttaaaaattgcatttacagattcaaattgtacattcaagatgtgcaaaa 37512002  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 35240379 - 35240333
Alignment:
Q  51 aaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  35240379 aaaactcaaataatgtttgtattgatgat-aaattgaatattacaaat 35240333  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 40772873 - 40772954
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40772873 ttagtaaacatcatatacaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 40772954  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 35130681 - 35130601
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  35130681 ttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgat-aaagtgaatattacaaat 35130601  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 40772940 - 40773032
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 205  Q
    |||||||||||||||||||||||||| ||||||||||   ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  40772940 gtgaatattacaaatgatgaagttatcccactaatgggattattacaagtatatatactactacaaactagtatctaacatatatctctaata 40773032  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 7737447 - 7737366
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| ||||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||||    
T  7737447 ttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaat 7737366  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 48821862 - 48821938
Alignment:
Q  22 aaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||||||||||||| ||||| |||||||||||||| | | ||| ||| ||||||||||||| |||||||||||||||    
T  48821862 aaacatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaaat 48821938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 36647489 - 36647563
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatat 91  Q
    |||| ||||||||||||||| ||| ||||||||||||||||| | ||| ||| |||||||||||||| |||||||    
T  36647489 ttagaaaacatgatatccaatgaaagaatgagagaaaacttagagaatatttctattgatgataaaaatgaatat 36647563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 34510763 - 34510691
Alignment:
Q  116 aatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatct 188  Q
    |||||||||||||| |||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||    
T  34510763 aatattacaaatgaggaagttatcccactaatggggttattacaagtatatatactactacaaactagtatct 34510691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 34512873 - 34512801
Alignment:
Q  116 aatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatct 188  Q
    |||||||||||||| |||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||    
T  34512873 aatattacaaatgaggaagttatcccactaatggggttattacaagtatatatactactacaaactagtatct 34512801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 12015208 - 12015130
Alignment:
Q  20 gtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  12015208 gtaaacatgatatccaaggaaagaatgagagaaaactcaaataatatttgtattgatgataaaagtgaatattacaaat 12015130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 12015144 - 12015054
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaa 203  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||| ||||| ||| ||||||||| ||| ||||||| |||||||||||    
T  12015144 gtgaatattacaaatgatgaagttatcccactaatggggttattacaagtatatatattactacaaactagtatctaacatatatctctaa 12015054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 36316286 - 36316365
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    |||| ||||||||||||||| ||||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||    
T  36316286 ttaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatgataaaagtgaatattacaa 36316365  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 6016849 - 6016926
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    |||| ||||||||||||||| ||||||||| || ||||||   | ||| ||| |||||||||||||||||||| ||||||    
T  6016849 ttaggaaacatgatatccaatgaaggaatgggaaaaaact--cagaatatttctattgatgataaaagtgaatgttacaa 6016926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 30866147 - 30866085
Alignment:
Q  117 atattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaa 179  Q
    |||||||||||||  || |||| |||||||||| | ||||||| ||||| |||||||||||||    
T  30866147 atattacaaatgagaaaattattccactaatggggttattacaagtatatatactactacaaa 30866085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 23046 - 22967
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  23046 ttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatattacaa 22967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 22938 - 22888
Alignment:
Q  155 ttacaggtatagatactactacaaattagaatctaacgtatatctctaata 205  Q
    ||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  22938 ttacaagtatatatactactacaaactagtatctaacatatatctctaata 22888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 25213905 - 25213825
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  25213905 ttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaaat 25213825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 25278055 - 25277975
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  25278055 ttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaaat 25277975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 27405308 - 27405388
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  27405308 ttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatggt-aaagtgaatattacaaat 27405388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 31185987 - 31186070
Alignment:
Q  11 ttattcttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||   ||||| ||| |||||||||||||||||||||||||||    
T  31185987 ttattattaggaaacatgatatccaacgaaggaatgagagaaaact--cataatatttctattgatgataaaagtgaatattacaa 31186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 4730672 - 4730581
Alignment:
Q  115 gaatattacaaa-tgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 205  Q
    |||||||||||| |||||||||||| ||| ||||||   ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  4730672 gaatattacaaaatgatgaagttatcccattaatgggattattacaagtatatatactactacaaactagcatctaacatatatctctaata 4730581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 39040541 - 39040619
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    |||| ||||||||||||||   |||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||    
T  39040541 ttaggaaacatgatatccaca-aaggaatgagagaaaactaagagaatgtttctattgatgataaaagtgaatattacaa 39040619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 43233961 - 43233880
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| |||||||  ||||| |||||||||||||||||||| ||| ||| ||| |||||||||||||  ||||||||||||||    
T  43233961 ttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatgataaagttgaatattacaaat 43233880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 35309149 - 35309228
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 96  Q
    |||| ||||||||||||||| |||||||||||| |||  | | | ||| ||| |||||||||||||||| ||||||||||    
T  35309149 ttaggaaacatgatatccaatgaaggaatgagaaaaatttcatagaatatttctattgatgataaaagtaaatattacaa 35309228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 35304678 - 35304754
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatatta 93  Q
    |||| ||||||||||| ||| |||| |||||||  || || | | ||| ||| ||||||||||||||||||||||||    
T  35304678 ttaggaaacatgatattcaatgaagaaatgagaagaatctcagagaatatttctattgatgataaaagtgaatatta 35304754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 41949405 - 41949465
Alignment:
Q  116 aatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactac 176  Q
    |||||||||||||| |||||||| |||||||||| | | |||||  |||| ||||||||||    
T  41949405 aatattacaaatgaggaagttatcccactaatggggttgttacaactatatatactactac 41949465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 41951803 - 41951863
Alignment:
Q  116 aatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactac 176  Q
    |||||||||||||| |||||||| |||||||||| | | |||||  |||| ||||||||||    
T  41951803 aatattacaaatgaggaagttatcccactaatggggttgttacaactatatatactactac 41951863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 27510485 - 27510566
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| ||||||||||||||| ||||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||||    
T  27510485 ttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaat 27510566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 13436436 - 13436516
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| |||||||||||  ||| |||||||||||||||||| ||  | | ||| |||||||||||||||||||||||||||||    
T  13436436 ttaggaaacatgatatttaagaaaggaatgagagaaaactcaag-attatttttattgatgataaaagtgaatattacaaat 13436516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 13436502 - 13436537
Alignment:
Q  113 gtgaatattacaaatgatgaagttataccactaatg 148  Q
    |||||||||||||||||||||||||| |||||||||    
T  13436502 gtgaatattacaaatgatgaagttatcccactaatg 13436537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 21215056 - 21215019
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaa 54  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  21215056 ttagtaaacatgacatccatggaaggaatgagagaaaa 21215019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 9905792 - 9905871
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| |||||||||||||||  |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  9905792 ttaggaaacatgatatccaac-aaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaat 9905871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 9908183 - 9908262
Alignment:
Q  17 ttagtaaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||| |||||||||||||||  |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  9908183 ttaggaaacatgatatccaac-aaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaat 9908262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 183101 - 183025
Alignment:
Q  22 aaacatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 98  Q
    |||||||  ||||| | ||| |||||||||||||| || |||| ||| | |||||||||||||||||||||||||||    
T  183101 aaacatggcatccatgaaagaaatgagagaaaactcaagtaatctttcttttgatgataaaagtgaatattacaaat 183025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 144750 - 144806
Alignment:
Q  132 aagttataccactaatggagatattacaggtatagatactactacaaattagaatct 188  Q
    ||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||    
T  144750 aagttatcccactaatggggttattacaagtatatatactactacaaactagtatct 144806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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