View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12944_low_2 (Length: 726)

Name: NF12944_low_2
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12944_low_2
NF12944_low_2
[»] chr2 (1 HSPs)
chr2 (1-716)||(43635935-43636652)


Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Complemental strand, 43636652 - 43635935
Alignment:
Q  1 aggtttctctgatgctattgatgagtcttctaagaaatggagtttttctatgaatgatggatctgaaggaggtagtttgttctcgccaagaggagggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636652 aggtttctctgatgctattgatgagtcttctaagaaatggagtttctctatgaatgatggatctgaaggaggtagtttgttctcgccaagaggagggaat 43636553  T
Q  101 gttggaaaacctcttgctggtttagagactcaaactaatattcaaaagattaatacaaatgcaacaaaaaacatcaaagaggttcttcatcaatctgtac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636552 gttggaaaacctcttgctggtttagagactcaaactaatattcaaaagattaatacaaatgcaacaaaaaacatcaaagaggttcttcatcaatctgtac 43636453  T
Q  201 atgaaaagaataaacaggtttctggaacaaatgagcatgctaatgctcctgctgcaaagtatgtttatttacatcatccttcttattgtttttagatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636452 atgaaaagaataaacaggtttctggaacaaatgagcatgctaatgctcctgctgcaaagtatgtttatttacatcatccttcttattgtttttagatttt 43636353  T
Q  301 acaattgcttagttctgttctgtttagnnnnnnngagtcat-ttttgttcatttcataatcaactaaatcatggaacatgtttgtaaacaagtttgatat 399  Q
    |||||||||||||||||||||||||||       |||| || ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  43636352 acaattgcttagttctgttctgtttagtttttttgagtaatcttttgttcattgcataatcaactaaatcatggaacatgttgataaacaagtttgatat 43636253  T
Q  400 agatcatgtcatgttttggttggctagattagacaaaggtgaaagatattgtaactcataaaaaactagacatgttactg-nnnnnnnnaatggctttat 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  43636252 agatcatgtcatgttttggttggctagattagacaaaggtgaaagatattgtaactcataaaaaactagacatgttactgtttttttttaatggctttat 43636153  T
Q  499 gttctgtgattcaacccttcaatagacatgannnnnnnnnnnnnggggtgagttttagttagatatattttcttatgcaaaaattgaatttttctatata 598  Q
    |||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636152 gttctgtgattcaacccttcaatagacatgatttttttctttttggggtgagttttagttagatatattttcttatgcaaaaattgaatttttctatata 43636053  T
Q  599 taattcaaaaatagtggctaatgaatttttgggttgttttcagaaaaggcctcatcttcaaagttgttaaacttatgtgttcttcattgtatcaaacttc 698  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636052 taattcaaaaatagtggcttatgaatttttgggttgttttcagaaaaggtctcatcttcaaagttgttaaacttatgtgttcttcattgtatcaaacttc 43635953  T
Q  699 tgtaatagggcacaggtt 716  Q
    ||||||||||||||||||    
T  43635952 tgtaatagggcacaggtt 43635935  T

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