View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_20 (Length: 301)
Name: NF12944_low_20
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 281
Target Start/End: Complemental strand, 7562308 - 7562033
Alignment:
| Q |
6 |
gtcgaagaatatggccaatgattgagaaatttagtaatttcttagatgttggtaattaagtgtttgttttgatgttgtaaaggaaattgaaagcaagaga |
105 |
Q |
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| T |
7562308 |
gtcgaagaagatggccaatgattgagaaatttagtaatttcttagatgttggtaattaagtgtttgttttgatgttgtaaaggaaattgaaagcaagaga |
7562209 |
T |
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| Q |
106 |
aatgnnnnnnnnnnnnnnnnnnngattgatgatgaatggagaaaagatacctgagatgacggataacaggggttctcaacaaaaagaaaaggaaaacatg |
205 |
Q |
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| T |
7562208 |
aatgtttttttaatttattttttgattgatgatgaatggagaaaagatacctgagatgacggataacaggggttctcaacaaaaagaaaaggaaaacatg |
7562109 |
T |
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| Q |
206 |
gttagactaaaaagtacgtaataccaaaggaaccaattattgtctttcctcaatgatctcctacaaaggaggacct |
281 |
Q |
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| T |
7562108 |
gttagactaaaaagtacgtaataccaaaggaaccaattgttgtctttcctcaatgatctcctacaaaagaggacct |
7562033 |
T |
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Back To:
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 33148838 - 33148874
Alignment:
| Q |
245 |
ttgtctttcctcaatgatctcctacaaaggaggacct |
281 |
Q |
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| T |
33148838 |
ttgtctttcctcaatggtctcctacaaaggaggacct |
33148874 |
T |
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