View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_25 (Length: 250)
Name: NF12944_low_25
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_25 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 35059385 - 35059613
Alignment:
| Q |
22 |
gctccctcaaccatttcggaaacaaccacacaatataacttggtatataaatactttaatcaataaatgaagccaaaagaaataacttccaaagactact |
121 |
Q |
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| T |
35059385 |
gctccctcaaccatttcggaaacaaccacacaatataacttgatagataaatactataatcaataaatgaagccaaaagaaataacttccaaagactact |
35059484 |
T |
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| Q |
122 |
ataattaaatacnnnnnnnttacaaatgggattatctactataatgatgttcttttgcatgcttgaggtttctggacaaacgttaggtagaaaacccaca |
221 |
Q |
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| T |
35059485 |
ataattaaatacaaaaaaataacaaatgggattatctactataatgatgttcttttgcatgcttgaggtttctggacaaacgttaggtagaaaacccaca |
35059584 |
T |
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| Q |
222 |
gaaaataataaacgcataaaattccacat |
250 |
Q |
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| T |
35059585 |
gaaaataataaacgcataaaattccacat |
35059613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 43020700 - 43020922
Alignment:
| Q |
18 |
aatagctccctcaaccatttcggaaacaaccacacaatataacttggtatataaatactttaatcaataaatgaagccaaaagaaataacttccaaagac |
117 |
Q |
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| T |
43020700 |
aatagctccctcaaccatttcgtaaacaaccacacaatataacttgatagataaatactattaacaataaatgaagccaagagaaataacttccaaagac |
43020799 |
T |
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| Q |
118 |
tactataattaaatacnnnnnnnttacaaatgggattatctactataatgatgttcttttgcatgcttgaggtttctggacaaacgttaggtagaaaacc |
217 |
Q |
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| T |
43020800 |
tacaataattaaatccaaaaaaataacaaatgggattatctactataatgatgttcttttgcatgcttgaggtttctggacaaacatttggtagaaaacc |
43020899 |
T |
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| Q |
218 |
cacagaaaataataaacgcataa |
240 |
Q |
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| T |
43020900 |
cacagaaattaataagcgcataa |
43020922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 42809878 - 42810100
Alignment:
| Q |
18 |
aatagctccctcaaccatttcggaaacaaccacacaatataacttggtatataaatactttaatcaataaatgaagccaaaagaaataacttccaaagac |
117 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||| | | |||||||||||||||| ||||||||||||||||||| |
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| T |
42809878 |
aatagctccctcaaccatttcgtaaacaaccacgcaatataacttgatagataaatactattaacaataaatgaagccaagagaaataacttccaaagac |
42809977 |
T |
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| Q |
118 |
tactataattaaatacnnnnnnnttacaaatgggattatctactataatgatgttcttttgcatgcttgaggtttctggacaaacgttaggtagaaaacc |
217 |
Q |
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| T |
42809978 |
tacaataattaaatccaaaaaaataacaaatgggattatctactataatgatgttcttttgcatgcttgaggtttctggacaaacgtgtggtagaaaacc |
42810077 |
T |
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| Q |
218 |
cacagaaaataataaacgcataa |
240 |
Q |
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| T |
42810078 |
cacagaaattaataagcgcataa |
42810100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 41567636 - 41567583
Alignment:
| Q |
168 |
atgttcttttgcatgcttgaggtttctggacaaacgttaggtagaaaacccaca |
221 |
Q |
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| T |
41567636 |
atgttcttctgcatgctggaggattctgggcaaactttaggtagaaaaaccaca |
41567583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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