View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_27 (Length: 239)
Name: NF12944_low_27
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13392168 - 13392390
Alignment:
| Q |
1 |
aacatgcaaggacaattttatggtctcaaaagtttgatcttattaagggaaagttcatatgcattttatgtatattgttttgcg--taaatattaacttg |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
13392168 |
aacatgcaaggacaattttatggtctcaaaagtttgatcttattaagggaaagttcatatgcattttatgtacattgttttgctcataaatattaacttg |
13392267 |
T |
|
| Q |
99 |
catggattgttatttccagatatcacctacaagttagctctctttttaaaaaagtatctactttaacaaatgttgtttggggatcttacaaatggactga |
198 |
Q |
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||| ||||||||||| || | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
13392268 |
cattgattgttattttcaaaaatcacctgcaagttagctctctttttagaaaagtatctactttaacaaatgttgttgggggatcttacaaatggactca |
13392367 |
T |
|
| Q |
199 |
catgttttgcgagagacaaaaaa |
221 |
Q |
| |
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|||| || | |||||||||||| |
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| T |
13392368 |
catgcttagttagagacaaaaaa |
13392390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 13381404 - 13381577
Alignment:
| Q |
1 |
aacatgcaaggacaattttatggtctcaaaagtttgatcttattaagggaaagttcatatgcattttatgtatattgttttgcg--taaatattaacttg |
98 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||| | |||||||| |||||||||||||| |
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| T |
13381404 |
aacatgcaaggacaattttctggtctcaaaagtttgatctta---agagaaagttcatatgcattgtatgtacactgttttgctcataaatattaacttg |
13381500 |
T |
|
| Q |
99 |
catggattgttatttccagatatcacctacaagttagctctctttttaaaaaagtatctactttaacaaatgttgtt |
175 |
Q |
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| T |
13381501 |
cattgattgctatttcaaaagatcacctacaagttaactctctttttaggaaagtaactactttaacaaatgttgtt |
13381577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4815021 - 4815237
Alignment:
| Q |
1 |
aacatgcaaggacaattttatggtctcaaaagtttgatcttattaagggaaagttcatatgcattttatgtatattgttttgcgtaaatatta--acttg |
98 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||||||||| ||||||| | | ||||||||||||| | |||||||| | |||| ||||| |
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| T |
4815021 |
aacatgcaaggacaattttctggtcttaaaactttgatctta---agggaaaatcagtgtgcattttatgtacactgttttgctcatcaattacaacttg |
4815117 |
T |
|
| Q |
99 |
catggattgttatttccagatatcacctacaagttagctctctttttaaaaaagtatctactttaacaaatgttgtttggggatcttacaaatggactga |
198 |
Q |
| |
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||| ||||| |||| | ||| ||||||| ||||||| ||||||||||| | |||| |||||||||||||||| | ||||||||| |||| | || || |
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| T |
4815118 |
cattgattgctattgctagagatcaccttcaagttaactctctttttagtgtaatatccactttaacaaatgttgatgggggatcttgcaaacgaacaga |
4815217 |
T |
|
| Q |
199 |
catgttttgcgagagacaaa |
218 |
Q |
| |
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|||| || | |||||||||| |
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| T |
4815218 |
catgcttcgtgagagacaaa |
4815237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 29637637 - 29637853
Alignment:
| Q |
1 |
aacatgcaaggacaattttatggtctcaaaagtttgatcttattaagggaaagttcatatgcattttatgtatattgttttgcgtaaatatta--acttg |
98 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||||||||| ||||||| | | | ||||||||||||| | |||||||| | |||| ||||| |
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|
| T |
29637637 |
aacatgcaaggacaattttctggtcttaaaactttgatctta---agggaaaatccgtgtgcattttatgtacactgttttgctcatcaattacaacttg |
29637733 |
T |
|
| Q |
99 |
catggattgttatttccagatatcacctacaagttagctctctttttaaaaaagtatctactttaacaaatgttgtttggggatcttacaaatggactga |
198 |
Q |
| |
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||| ||||| |||| | ||| ||||||| ||||||| ||||||||||| | |||| |||||||||||||||||| ||||||||| |||| |||| || |
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| T |
29637734 |
cattgattgctattgctagagatcaccttcaagttaactctctttttagtgtaatatccactttaacaaatgttgttgggggatcttgcaaacggaccga |
29637833 |
T |
|
| Q |
199 |
catgttttgcgagagacaaa |
218 |
Q |
| |
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|||| || | |||||||||| |
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| T |
29637834 |
catgcttcgtgagagacaaa |
29637853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 676921 - 676705
Alignment:
| Q |
1 |
aacatgcaaggacaattttatggtctcaaaagtttgatcttattaagggaaagttcatatgcattttatgtatattgttttgcgtaaatatta--acttg |
98 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||||||||| ||||||| | | ||||||||||||| | |||||||| | |||| ||||| |
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|
| T |
676921 |
aacatgcaaggacaattttctggtcttaaaactttgatctta---agggaaaatctgtgtgcattttatgtacactgttttgctcatcaattacaacttg |
676825 |
T |
|
| Q |
99 |
catggattgttatttccagatatcacctacaagttagctctctttttaaaaaagtatctactttaacaaatgttgtttggggatcttacaaatggactga |
198 |
Q |
| |
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||| ||||| |||| | ||| ||||||| ||||||| ||||||||||| | |||| |||||||||||||||||| ||||||||| |||| |||| || |
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| T |
676824 |
cattgattgctattgctagagatcaccttcaagttaactctctttttagtgtaatatccactttaacaaatgttgttgggggatcttgcaaacggaccga |
676725 |
T |
|
| Q |
199 |
catgttttgcgagagacaaa |
218 |
Q |
| |
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|||| || | |||||||||| |
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| T |
676724 |
catgcttcgtgagagacaaa |
676705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 30867242 - 30867133
Alignment:
| Q |
93 |
aacttgcatggattgttatttccagatatcacctacaagttagctctctttttaaaaaagtatctactttaacaaatgttgtttggggatcttacaaatg |
192 |
Q |
| |
|
||||||||| ||||| | |||||| | ||||||| | ||||| || ||||||| |||| |||| |||||| |||||||||||| ||||||| |||| |
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|
| T |
30867242 |
aacttgcattgattgctgtttccaaagatcaccttctagttaattccctttttagaaaaatatccactttattaaatgttgtttgaggatcttgcaaaca |
30867143 |
T |
|
| Q |
193 |
gactgacatg |
202 |
Q |
| |
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|||||||||| |
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|
| T |
30867142 |
gactgacatg |
30867133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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