View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12944_low_28 (Length: 238)

Name: NF12944_low_28
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12944_low_28
NF12944_low_28
[»] chr1 (2 HSPs)
chr1 (55-238)||(44005901-44006084)
chr1 (65-146)||(23303881-23303962)
[»] chr3 (3 HSPs)
chr3 (60-238)||(27001951-27002151)
chr3 (65-146)||(40108605-40108686)
chr3 (119-169)||(40108623-40108673)
[»] chr5 (9 HSPs)
chr5 (60-238)||(4126502-4126702)
chr5 (67-146)||(509009-509088)
chr5 (65-146)||(19082300-19082381)
chr5 (124-169)||(509025-509070)
chr5 (139-238)||(4560992-4561098)
chr5 (171-238)||(509094-509161)
chr5 (99-146)||(4560993-4561040)
chr5 (60-126)||(4560893-4560959)
chr5 (119-169)||(19082318-19082368)
[»] chr7 (4 HSPs)
chr7 (81-170)||(3777526-3777615)
chr7 (60-170)||(3777608-3777718)
chr7 (84-169)||(3777568-3777653)
chr7 (99-147)||(3777452-3777500)
[»] chr4 (2 HSPs)
chr4 (65-146)||(36757463-36757544)
chr4 (119-169)||(36757481-36757531)
[»] chr2 (1 HSPs)
chr2 (73-146)||(16148085-16148158)
[»] scaffold0477 (1 HSPs)
scaffold0477 (121-169)||(1423-1471)
[»] chr6 (1 HSPs)
chr6 (121-169)||(4650406-4650454)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 44006084 - 44005901
Alignment:
Q  55 ttggcagtctagttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaatttgatta 154  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44006084 ttgggagtctagttttagttctattatcaatttgaataccgttattttgaatttggctatattgttgtcaatttgaacaccgtcgttttgaatttgatta 44005985  T
Q  155 tattgttgtcaatttatcattttgaacgctgtcgtattgaatttgcttatattgctctcaatttgaagaatttggttatattat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005984 tattgttgtcaatttatcattttgaacgctgtcgtattgaatttgcttatattgctctcaatttgaagaatttggttatattat 44005901  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 23303881 - 23303962
Alignment:
Q  65 agttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaa 146  Q
    |||||| ||| |||| |||||||||| || |||||| | ||||||  ||||||||| |||||||||||||||| ||||||||    
T  23303881 agttttggttgtattctcaatttgaacactgttattataaatttggttatattgttatcaatttgaacaccgtagttttgaa 23303962  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 27001951 - 27002151
Alignment:
Q  60 agtctagttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaa---------------tttgaacaccgtcgttttg 144  Q
    |||||||||||  |||||||||||||||||| ||||| |||||||||||| |||||||||||||||               |||||||||||| ||||||    
T  27001951 agtctagttttgattctattatcaatttgaacaccgtcattttgaatttggctatattgttgtcaatttgaatagcatagttttgaacaccgttgttttg 27002050  T
Q  145 aatttgattatattgttgtcaattt-------atcattttgaacgctgtcgtattgaatttgcttatattgctctcaatttgaagaatttggttatatta 237  Q
    |||||||||||||||||||||||||       |||||||||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  27002051 aatttgattatattgttgtcaatttaaacaccatcattttgaacactatcatattgaatttggttatattgctctcaatttgaggaatttggttatatta 27002150  T
Q  238 t 238  Q
    |    
T  27002151 t 27002151  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 40108686 - 40108605
Alignment:
Q  65 agttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaa 146  Q
    |||||| |||||||| |||||||||| ||||||||||| ||||||  ||||||||| |||||||||||||||| ||||||||    
T  40108686 agttttggttctattgtcaatttgaacaccgttattttaaatttggttatattgttatcaatttgaacaccgtagttttgaa 40108605  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 40108673 - 40108623
Alignment:
Q  119 ttgtcaatttgaacaccgtcgttttgaatttgattatattgttgtcaattt 169  Q
    |||||||||||||||||||  |||| |||||| |||||||||| |||||||    
T  40108673 ttgtcaatttgaacaccgttattttaaatttggttatattgttatcaattt 40108623  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 4126502 - 4126702
Alignment:
Q  60 agtctagttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaac---------------accgtcgttttg 144  Q
    |||||||||||  |||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||               ||||||||||||    
T  4126502 agtctagttttgattctattatcaatttgaacaccgtcattttgaacttggctatattgttgtcaatttgaacagcgtagttttgaataccgtcgttttg 4126601  T
Q  145 aatttgattatattgttgtcaattt-------atcattttgaacgctgtcgtattgaatttgcttatattgctctcaatttgaagaatttggttatatta 237  Q
    |||||||||||||||||||||||||       |||||||||||| | ||| | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  4126602 aatttgattatattgttgtcaatttgaataccatcattttgaacacagtcattttgaatttggttatattgctctcaatttgaggaatttggttatatta 4126701  T
Q  238 t 238  Q
    |    
T  4126702 t 4126702  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 509009 - 509088
Alignment:
Q  67 ttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaa 146  Q
    |||| |||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  509009 ttttggttctattataaatttgaacaccgtcattttgaatttgattatattgttgtcaatttgaacaccgtagttttgaa 509088  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 19082381 - 19082300
Alignment:
Q  65 agttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaa 146  Q
    |||||| |||||||| |||||||||| ||||||||||| ||||||  ||||||||| |||||||||||||||| ||||||||    
T  19082381 agttttggttctattgtcaatttgaacaccgttattttaaatttggttatattgttatcaatttgaacaccgtagttttgaa 19082300  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 509025 - 509070
Alignment:
Q  124 aatttgaacaccgtcgttttgaatttgattatattgttgtcaattt 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  509025 aatttgaacaccgtcattttgaatttgattatattgttgtcaattt 509070  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 4560992 - 4561098
Alignment:
Q  139 gttttgaatttgattatattgttgtcaattta-------tcattttgaacgctgtcgtattgaatttgcttatattgctctcaatttgaagaatttggtt 231  Q
    |||||||||||||| ||||||||||||||||        | ||||||||| ||||| | ||||||||| |||||||||| |||||||||  |||||||||    
T  4560992 gttttgaatttgatcatattgttgtcaatttgaacaccgttattttgaacactgtcattttgaatttggttatattgctgtcaatttgagaaatttggtt 4561091  T
Q  232 atattat 238  Q
    |||||||    
T  4561092 atattat 4561098  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 509094 - 509161
Alignment:
Q  171 tcattttgaacgctgtcgtattgaatttgcttatattgctctcaatttgaagaatttggttatattat 238  Q
    ||||||||||| ||||  | ||||||||| |||||| ||  ||||||||| |||||||||||||||||    
T  509094 tcattttgaacactgttatcttgaatttggttatatagcagtcaatttgaggaatttggttatattat 509161  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 4560993 - 4561040
Alignment:
Q  99 ttttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaa 146  Q
    ||||||||||||  |||||||||||||||||||||||||  |||||||    
T  4560993 ttttgaatttgatcatattgttgtcaatttgaacaccgttattttgaa 4561040  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 4560893 - 4560959
Alignment:
Q  60 agtctagttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaat 126  Q
    |||| |||||| |||||||||||||||||||||  || ||||||||||||  ||| | |||||||||    
T  4560893 agtccagttttggttctattatcaatttgaatattgtcattttgaatttggttatgtggttgtcaat 4560959  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 19082368 - 19082318
Alignment:
Q  119 ttgtcaatttgaacaccgtcgttttgaatttgattatattgttgtcaattt 169  Q
    |||||||||||||||||||  |||| |||||| |||||||||| |||||||    
T  19082368 ttgtcaatttgaacaccgttattttaaatttggttatattgttatcaattt 19082318  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 3777615 - 3777526
Alignment:
Q  81 tcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaatttgattatattgttgtcaattta 170  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||  ||||||| |||||||||||    
T  3777615 tcaatttaaacaccgttattttgaatttgattatattgttgtcaatttgaacaccatcattttgaattttgttatattattgtcaattta 3777526  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 3777718 - 3777608
Alignment:
Q  60 agtctagttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaatttgattatattg 159  Q
    |||| |||||||||| |||| ||||||| || ||||| ||||||||||||  |||||||| ||| ||||||||||| || ||||||||||  ||||||||    
T  3777718 agtccagttttagttttattgtcaatttaaacaccgtcattttgaatttggttatattgtggtcgatttgaacaccatcattttgaattttgttatattg 3777619  T
Q  160 ttgtcaattta 170  Q
    |||||||||||    
T  3777618 ttgtcaattta 3777608  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 3777653 - 3777568
Alignment:
Q  84 atttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaatttgattatattgttgtcaattt 169  Q
    ||||||| ||| | |||||||||||   ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  3777653 atttgaacaccatcattttgaattttgttatattgttgtcaatttaaacaccgttattttgaatttgattatattgttgtcaattt 3777568  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 3777500 - 3777452
Alignment:
Q  99 ttttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaat 147  Q
    |||| ||||||  ||||||||||||||||||||||||||| ||||||||    
T  3777500 ttttaaatttggttatattgttgtcaatttgaacaccgtcattttgaat 3777452  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 36757544 - 36757463
Alignment:
Q  65 agttttagttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaa 146  Q
    |||||| |||||||| |||||||||| ||||||||||| ||||||  ||||||||| |||||||||||||||| ||||||||    
T  36757544 agttttggttctattgtcaatttgaacaccgttattttaaatttggttatattgttatcaatttgaacaccgtagttttgaa 36757463  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 36757531 - 36757481
Alignment:
Q  119 ttgtcaatttgaacaccgtcgttttgaatttgattatattgttgtcaattt 169  Q
    |||||||||||||||||||  |||| |||||| |||||||||| |||||||    
T  36757531 ttgtcaatttgaacaccgttattttaaatttggttatattgttatcaattt 36757481  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 16148158 - 16148085
Alignment:
Q  73 ttctattatcaatttgaataccgttattttgaatttgactatattgttgtcaatttgaacaccgtcgttttgaa 146  Q
    ||||||| |||||||||| ||||||||| | ||||||  |||||| || |||||||||||||| | ||||||||    
T  16148158 ttctattgtcaatttgaacaccgttattataaatttggttatattattatcaatttgaacaccatagttttgaa 16148085  T

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Target: scaffold0477 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 1471 - 1423
Alignment:
Q  121 gtcaatttgaacaccgtcgttttgaatttgattatattgttgtcaattt 169  Q
    |||| ||||||| ||||| |||| |||||| ||||||||||||||||||    
T  1471 gtcattttgaacgccgtcattttaaatttggttatattgttgtcaattt 1423  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 4650454 - 4650406
Alignment:
Q  121 gtcaatttgaacaccgtcgttttgaatttgattatattgttgtcaattt 169  Q
    |||| ||||||| ||||| |||| |||||| ||||||||||||||||||    
T  4650454 gtcattttgaacgccgtcattttaaatttggttatattgttgtcaattt 4650406  T

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