View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12944_low_4 (Length: 628)
Name: NF12944_low_4
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12944_low_4 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 191 - 601
Target Start/End: Original strand, 101469 - 101883
Alignment:
| Q |
191 |
tcttaatgcctaatgacattgcctatcaggatgctttctaatagggaatcggctaaactctcacgaaatagaaagcaaggtcgggt-gttgatgaatgct |
289 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||| |
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| T |
101469 |
tcttaacgcctaatgacattgcctctcaggatgctttctaatagggaatcggctaaactctcaggaaatagaaagcaagctcgtattgttgatgaatgct |
101568 |
T |
|
| Q |
290 |
ataaatctttggggctataaatcatttggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggtt |
389 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
101569 |
ataaatctttggggccataaatcatttggatatgaatgctagctatggtggatttgcatctgctttgattaagaatcctgtttgggttatgaacgtggtt |
101668 |
T |
|
| Q |
390 |
cctgtcgaggttaaggttgatacacttggagcaatatatgaaaggggattgattggatgataccataattgaaccatttatcacatattaaacaatattc |
489 |
Q |
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| T |
101669 |
cttgtcgaggttaaggttgatactcttcgagcaatatatgaaaggggattgattggatgataccatgattgaacaatttatcacatattaaacaatattc |
101768 |
T |
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| Q |
490 |
aatgttatatttccattgtgatttccttgattaattaaacaattgtgttttgattattttgtgttcacaattgttcctcttctgggttg---ttaaaagt |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
101769 |
aatgttatatttccattgtgatttccttgattaattaaacaattgtgctttgattattttgtgttcacaattgttcctctcctgggttgttattaaaagt |
101868 |
T |
|
| Q |
587 |
aaattaactataata |
601 |
Q |
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||||||||||||||| |
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| T |
101869 |
aaattaactataata |
101883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 101298 - 101382
Alignment:
| Q |
16 |
agacatttaatccttttgaacttggaaatatgttgttac------gtcaacgacaagtggatccttaggcgaagaggaggcttat |
94 |
Q |
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|||||| | |||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||||| |
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| T |
101298 |
agacatctgatccttctgaacttggaaacctgttgttacaaccaggtcaacgacaagtggatcctcaggcgaagatgaggcttat |
101382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 316 - 446
Target Start/End: Complemental strand, 45785042 - 45784912
Alignment:
| Q |
316 |
tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgaggttaaggttgatacact |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| ||| ||||||||| || || |
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| T |
45785042 |
tggatatgaatgctaacttgggtggatttgcatctgctttagttaagaatcctgtttgggttatgaatgtggttcctgtccaggctaaggttgacaccct |
45784943 |
T |
|
| Q |
416 |
tggagcaatatatgaaaggggattgattgga |
446 |
Q |
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||| |||||||||||||||||| |||||||| |
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| T |
45784942 |
tggggcaatatatgaaaggggactgattgga |
45784912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 10281418 - 10281348
Alignment:
| Q |
457 |
attgaaccatttatcacatattaaacaatattcaatgttatatttccattgtgatttccttgattaattaa |
527 |
Q |
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| T |
10281418 |
attgaaccatttatcacatattaaacaatattcaatgttatattttcattgtgatttccttgattaattaa |
10281348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 319 - 431
Target Start/End: Complemental strand, 10281577 - 10281461
Alignment:
| Q |
319 |
atatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttat----gaacgtggttcctgtcgaggttaaggttgatacac |
414 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||| | | |||||||||||||| |
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| T |
10281577 |
atatgaatgctaactacggtggatttgcatttgctttgattaagaaccatgtttgggttatatatgaacgtggttcctgtccatgctaaggttgatacac |
10281478 |
T |
|
| Q |
415 |
ttggagcaatatatgaa |
431 |
Q |
| |
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||||||||||||||||| |
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| T |
10281477 |
ttggagcaatatatgaa |
10281461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 47544116 - 47544190
Alignment:
| Q |
92 |
tatgaatggagacaataacgcttctaatgcaaaacgagttaagaggtaacaatattctctgagttcaatatgttt |
166 |
Q |
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||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
47544116 |
tatgaatagagacaataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgttt |
47544190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 47528128 - 47528179
Alignment:
| Q |
194 |
taatgcctaatgacattgcctatcaggatgctttctaatagggaatcggcta |
245 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||| |||| |
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| T |
47528128 |
taatgcctaatgacattgcctttcaggatgctctctaatagggaatcagcta |
47528179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 28638624 - 28638543
Alignment:
| Q |
318 |
gatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgagg |
399 |
Q |
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|||||||||||| ||||||| ||||||||| |||| ||||| | ||||||||||||| ||||| || ||||| ||||||| |
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| T |
28638624 |
gatatgaatgcttacttgggaggatttgcagctgcaatgattgatgatccagtttgggtcatgaatgttgttccggtcgagg |
28638543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 47544247 - 47544316
Alignment:
| Q |
180 |
tccaaacatggtcttaatgcctaatgacattgcc-tatcaggatgctttctaatagggaatcggctaaac |
248 |
Q |
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| T |
47544247 |
tccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaac |
47544316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 503700 - 503625
Alignment:
| Q |
316 |
tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcc |
391 |
Q |
| |
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|||||||||||||| ||| |||||||||||| |||| ||| | || ||||||||||||||||||| || ||||| |
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| T |
503700 |
tggatatgaatgctggctttggtggatttgcagctgcattggtgaaatatccagtttgggttatgaatgttgttcc |
503625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 524
Target Start/End: Complemental strand, 48014499 - 48014451
Alignment:
| Q |
476 |
attaaacaatattcaatgttatatttccattgtgatttccttgattaat |
524 |
Q |
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| T |
48014499 |
attaaacaatattcaataaaatatttcgattgtgattttcttgattaat |
48014451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 457 - 526
Target Start/End: Complemental strand, 13662 - 13593
Alignment:
| Q |
457 |
attgaaccatttatcacatattaaacaatattcaatgttatatttccattgtgatttccttgattaatta |
526 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
13662 |
attgaaccatttatcacatattaatcaatattcaatgttatatttccgttgtaatttccttgattaatta |
13593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 321 - 446
Target Start/End: Complemental strand, 64361 - 64236
Alignment:
| Q |
321 |
atgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgaggttaaggttgatacacttggag |
420 |
Q |
| |
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||||||||| | ||||||||||||||| || | | |||| |||| ||||||||||||| || |||||| | | | ||| |||||||||||||||| |
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| T |
64361 |
atgaatgcttatttgggtggatttgcagcttcacttgttaaatatcctatttgggttatgaatgttgttcctattcaagctaaagttgatacacttggag |
64262 |
T |
|
| Q |
421 |
caatatatgaaaggggattgattgga |
446 |
Q |
| |
|
||||||||||||| || ||||||||| |
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|
| T |
64261 |
caatatatgaaagagggttgattgga |
64236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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