View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12944_low_7 (Length: 566)

Name: NF12944_low_7
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12944_low_7
NF12944_low_7
[»] chr1 (6 HSPs)
chr1 (10-531)||(44005296-44005817)
chr1 (11-361)||(43986723-43987070)
chr1 (179-293)||(43907628-43907742)
chr1 (167-293)||(19568035-19568161)
chr1 (179-293)||(23681599-23681713)
chr1 (184-259)||(42414142-42414217)
[»] chr3 (1 HSPs)
chr3 (483-531)||(27002227-27002275)
[»] chr8 (2 HSPs)
chr8 (191-258)||(24042477-24042544)
chr8 (209-258)||(42699650-42699699)
[»] chr5 (3 HSPs)
chr5 (142-293)||(9363537-9363688)
chr5 (485-531)||(509256-509302)
chr5 (202-259)||(8838505-8838562)
[»] chr2 (4 HSPs)
chr2 (176-293)||(20604329-20604446)
chr2 (199-258)||(24001587-24001646)
chr2 (197-259)||(20612153-20612215)
chr2 (197-293)||(20894547-20894643)
[»] chr7 (2 HSPs)
chr7 (197-293)||(41682164-41682260)
chr7 (191-225)||(19879693-19879727)
[»] chr4 (2 HSPs)
chr4 (179-258)||(44669372-44669451)
chr4 (179-258)||(44688648-44688727)


Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 10 - 531
Target Start/End: Original strand, 44005296 - 44005817
Alignment:
Q  10 aagaatatcataacagtgttccatgctgaagttaagtggtgtaatcgagtttgatggattttccaacaatggtttaacagggtaagataatatttcgtta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005296 aagaatatcataacagtgttccatgctgaagttaagtggtgtaatcgagtttgatggattttccaacaatggtttaacagggtaagataatatttcgtta 44005395  T
Q  110 ggattacggcggactccgattccgctagagaacaattgtggagaatcggtagagttaagaaagtgggtttttgtgaattggggattagagattagggttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005396 ggattacggcggactccgattccgctagagaacaattgtggagaatcgatagagttaagaaagtgggtttttgtgaattggggattagagattagggttt 44005495  T
Q  210 tccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggcagctgcttcgaaggtac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005496 tccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggcagctgcttcgaaggtac 44005595  T
Q  310 gtcgtcggtaatcggagaaggaagatattggctgttgacggtggtttcatcatcacccattgcgcgtgtatgttgcaggccttcagccattttagaaggt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005596 gtcgtcggtaatcggagaaggaagatattggctgttgacggtggtttcatcatcacccattgcgcgtgtatgttgcaggccttcagccattttagaaggt 44005695  T
Q  410 caagattgctttgaacaggataaagagtaattaatgcacccactatttttctcttgtccctgcaagtaaattgattttctcttgtccctgcacgtaagtt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005696 caagattgctttgaacaggataaagagtaattaatgcacccactatttttctcttgtccctgcaagtaaattgattttctcttgtccctgcacgtaagtt 44005795  T
Q  510 cctaataatattgctgctgcca 531  Q
    ||||||||||||||||||||||    
T  44005796 cctaataatattgctgctgcca 44005817  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 43986723 - 43987070
Alignment:
Q  11 agaatatcataacagtgttccatgctgaagttaagtggtgtaatcgagtttgatggattttccaacaatggtttaacagggtaagataatatttcgttag 110  Q
    |||||||| ||||||||  || |||||||||||||||||||||| |   ||||| ||||||||||||||||||||||||| ||||||| |||||||| ||    
T  43986723 agaatatcgtaacagtgccccgtgctgaagttaagtggtgtaataggagttgatagattttccaacaatggtttaacaggataagatagtatttcgtaag 43986822  T
Q  111 gattacggcggactccgattccgctagagaacaattgtggagaatcggtagagttaagaaagtgggtttttgtgaattggggattagagattagggtttt 210  Q
    ||||||||| |||||| |   ||  ||| |||| ||||||| || |||| ||| | ||||||||| | |||| |||||| || |  ||||||||||||||    
T  43986823 gattacggcagactccaagggcggcagataacagttgtggataagcggttgaggtcagaaagtggttgtttgcgaattgtgggtctgagattagggtttt 43986922  T
Q  211 ccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggcagctgcttcgaaggtacg 310  Q
    ||| |||||||||| ||| ||  ||||||| |||||| ||||||||||  |||||||||| |||| ||||||||||| |||||| ||||| ||  |||      
T  43986923 ccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtctcaaaaggatctcaatgatgagttctttcggcagttgcttggagagta-- 43987020  T
Q  311 tcgtcggtaatcggagaaggaagatattggctgttgacggtggtttcatca 361  Q
     |||||| | | ||||||||||| | |||| ||||||| ||||| ||||||    
T  43987021 -cgtcggcagttggagaaggaagctgttggttgttgacagtggtatcatca 43987070  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 43907742 - 43907628
Alignment:
Q  179 tttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacga 278  Q
    |||| |||||||| || |||||||||||||||||| ||||||||||| |||||  |||| |  |||||| ||||||||||| |||||||||| || ||||    
T  43907742 tttgcgaattgggaatcagagattagggttttccatgatttgcaaacacacttgtattggacaagggatttcaccggaagcctcaaaaggatctcgacga 43907643  T
Q  279 tgagttcttccggca 293  Q
    |||||||||||||||    
T  43907642 tgagttcttccggca 43907628  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 19568035 - 19568161
Alignment:
Q  167 agaaagtgggtttttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaa 266  Q
    |||| |||||| ||||||||||| | |||||| |||||||||||||| ||||||||||||  |||  |||| || |||||||||||||||||| ||| ||    
T  19568035 agaaggtgggtctttgtgaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaa 19568134  T
Q  267 ggatatcaacgatgagttcttccggca 293  Q
    |||| || | || || |||||||||||    
T  19568135 ggatgtcgaagaggacttcttccggca 19568161  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 23681713 - 23681599
Alignment:
Q  179 tttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacga 278  Q
    |||| |||||| ||||| || |||||||||||||| |||||| ||||||||||  |||| || ||||||||||| |||||| ||| ||||||||| | |     
T  23681713 tttgcgaattgaggattggaaattagggttttccatgatttggaaacgcactttaattggagaagggatctcacaggaagcctcagaaggatatcgaagt 23681614  T
Q  279 tgagttcttccggca 293  Q
    ||| |||||||||||    
T  23681613 tgacttcttccggca 23681599  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 42414217 - 42414142
Alignment:
Q  184 gaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagc 259  Q
    |||||||||||  ||||||||||||||||| |||||||| || ||| |  ||||||| || ||||| |||||||||    
T  42414217 gaattggggatcggagattagggttttccatgatttgcatacacacctgaattgaagaagtgatcttaccggaagc 42414142  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 27002275 - 27002227
Alignment:
Q  483 attttctcttgtccctgcacgtaagttcctaataatattgctgctgcca 531  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  27002275 attttctcttgttcctgcacgtaagttcctgataatattgctgctgcca 27002227  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 24042477 - 24042544
Alignment:
Q  191 ggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    |||| |||||||||  ||||||||||||| || ||||| ||| |||||||||||||||||||||||||    
T  24042477 ggatcagagattagaattttccaagatttacagacgcatttaaattgaaggagggatctcaccggaag 24042544  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 42699699 - 42699650
Alignment:
Q  209 ttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    ||||| ||||||||||| || ||| ||||||||||||||||||| |||||    
T  42699699 ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaag 42699650  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 293
Target Start/End: Complemental strand, 9363688 - 9363537
Alignment:
Q  142 caattgtggagaatcggtagagttaagaaagtgggtttttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaagg 241  Q
    |||||||||| || |||||||| | |||||| || | |||| |||||||| ||  ||||||||||||||||| | ||||||||| | |||| |  |||||    
T  9363688 caattgtggataagcggtagagatcagaaagcggttgtttgcgaattgggtatctgagattagggttttccatgttttgcaaacacgcttaaaccgaagg 9363589  T
Q  242 agggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggca 293  Q
    || ||||| ||||||||  | |  ||||| | ||||||||||||||| ||||    
T  9363588 agtgatcttaccggaagactgaggaggattttaacgatgagttcttctggca 9363537  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 531
Target Start/End: Complemental strand, 509302 - 509256
Alignment:
Q  485 tttctcttgtccctgcacgtaagttcctaataatattgctgctgcca 531  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||    
T  509302 tttctcttattcctgcacgtaagttcctaataatattggtgctgcca 509256  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 8838505 - 8838562
Alignment:
Q  202 tagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagc 259  Q
    |||||||||||| ||||||||||| |||||  || ||||||| ||||| |||||||||    
T  8838505 tagggttttccatgatttgcaaacacacttgaatcgaaggagtgatcttaccggaagc 8838562  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 20604329 - 20604446
Alignment:
Q  176 gtttttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaa 275  Q
    |||| ||| ||||| ||||  ||||||||||||||||| ||||| |  ||||||||  |||||||||||||| ||||||||||| || | ||||| ||||    
T  20604329 gtttgtgtaaattgaggatcggagattagggttttccaggatttactcacgcacttgtattgaaggagggatttcaccggaagcctcgagaggatttcaa 20604428  T
Q  276 cgatgagttcttccggca 293  Q
     ||  ||||| |||||||    
T  20604429 agacaagttcatccggca 20604446  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 24001646 - 24001587
Alignment:
Q  199 gattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    ||||||| ||||||||||||| || ||||| ||| ||||||||||||||||||| |||||    
T  24001646 gattaggattttccaagatttacacacgcatttaaattgaaggagggatctcacaggaag 24001587  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 20612153 - 20612215
Alignment:
Q  197 gagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagc 259  Q
    ||||||||||||||||| ||||| || ||||||||  |||| ||||||| | |||||||||||    
T  20612153 gagattagggttttccatgatttacacacgcacttgtattgcaggagggttttcaccggaagc 20612215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 20894643 - 20894547
Alignment:
Q  197 gagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggca 293  Q
    |||||||||| |||||| ||||| || ||||||||  |||| ||||||| | ||||||||||| || | ||||| |||| ||  ||||| |||||||    
T  20894643 gagattagggctttccatgatttacacacgcacttgtattggaggagggttttcaccggaagcctcgagaggatttcaaagacaagttcatccggca 20894547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 41682164 - 41682260
Alignment:
Q  197 gagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggca 293  Q
    ||||||||||||||||| |||||| | |||||| || |||||||||||||  |||| |||||  | |  ||||| |||| |||||||||||||||||    
T  41682164 gagattagggttttccatgatttggacacgcacataaattgaaggagggaagtcactggaagtctgaggaggatctcaaggatgagttcttccggca 41682260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 19879693 - 19879727
Alignment:
Q  191 ggattagagattagggttttccaagatttgcaaac 225  Q
    |||||||| ||||||||||||||||||||||||||    
T  19879693 ggattagaaattagggttttccaagatttgcaaac 19879727  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 44669372 - 44669451
Alignment:
Q  179 tttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    |||| |||||||||||  |||||||  ||||||||   ||||||||||||| |  |||||||||||||||||||||||||    
T  44669372 tttgcgaattggggatctgagattaacgttttccagagtttgcaaacgcacctgaattgaaggagggatctcaccggaag 44669451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 44688648 - 44688727
Alignment:
Q  179 tttgtgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaag 258  Q
    |||| |||||||||||  |||||||  ||||||||   ||||||||||||| |  |||||||||||||||||||||||||    
T  44688648 tttgcgaattggggatctgagattaacgttttccagagtttgcaaacgcacctgaattgaaggagggatctcaccggaag 44688727  T

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