View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12944_low_8 (Length: 500)

Name: NF12944_low_8
Description: NF12944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12944_low_8
NF12944_low_8
[»] chr6 (5 HSPs)
chr6 (2-446)||(33823143-33823585)
chr6 (50-129)||(31789943-31790022)
chr6 (449-484)||(33823867-33823902)
chr6 (256-314)||(10400166-10400224)
chr6 (250-311)||(2548316-2548379)
[»] chr4 (9 HSPs)
chr4 (50-136)||(34786577-34786663)
chr4 (249-314)||(19422315-19422380)
chr4 (76-129)||(39635408-39635461)
chr4 (269-313)||(7730513-7730557)
chr4 (250-314)||(9843775-9843839)
chr4 (249-305)||(24160603-24160659)
chr4 (89-133)||(35752799-35752843)
chr4 (251-305)||(24091371-24091424)
chr4 (250-288)||(55994296-55994334)
[»] chr2 (3 HSPs)
chr2 (250-314)||(10150652-10150716)
chr2 (250-314)||(26484193-26484257)
chr2 (249-289)||(9478221-9478261)
[»] chr1 (3 HSPs)
chr1 (268-314)||(21516255-21516301)
chr1 (249-314)||(30815743-30815809)
chr1 (249-305)||(40357994-40358050)
[»] chr8 (4 HSPs)
chr8 (269-314)||(40279724-40279769)
chr8 (250-294)||(4558715-4558759)
chr8 (250-298)||(32181262-32181310)
chr8 (247-295)||(44617893-44617941)
[»] chr5 (4 HSPs)
chr5 (249-314)||(40499783-40499848)
chr5 (249-314)||(11095577-11095642)
chr5 (270-314)||(15985372-15985416)
chr5 (249-313)||(36638644-36638708)
[»] chr7 (6 HSPs)
chr7 (249-305)||(35536013-35536069)
chr7 (10-45)||(33810995-33811030)
chr7 (249-287)||(27481402-27481440)
chr7 (252-301)||(44348505-44348554)
chr7 (250-314)||(39539870-39539934)
chr7 (250-294)||(47528042-47528086)
[»] chr3 (4 HSPs)
chr3 (250-314)||(44237390-44237454)
chr3 (247-314)||(41159006-41159073)
chr3 (249-299)||(44488796-44488846)
chr3 (249-314)||(48528475-48528540)


Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 2 - 446
Target Start/End: Original strand, 33823143 - 33823585
Alignment:
Q  2 aaagtagtatctacaaaacaaatgatcctctacctcttgaatactcggaccaaccggcaaaactcctctaccaaataagtttgagcgagtaggaagtcta 101  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  33823143 aaagtagtatctacaaaacaagtgatcctccacctcttgaatactcggaccaactggcaaaactcctctacgagataagtttgagcgagtaggaagtcta 33823242  T
Q  102 gcaagaattaattgccaagagaaaatttaaattttggggagccaaactaaggttaggacagttatatctagttacaagtagttatacaatgtgctagaga 201  Q
    |||| ||||||||||||||||||||||| || |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823243 gcaataattaattgccaagagaaaatttgaactttttggagtcaaactaaggttaggacagttatatctagttacaagtagttatacaatgtgctagaga 33823342  T
Q  202 ctacactatctctttgtgagctctaggttaacactattcttttgatagttatagaaatagcttatgcataaacatttatataataagcgtttaattaagt 301  Q
     ||||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823343 ttacactatctctttgtgagctctagattaac--tattcttttgataattatagaaatagcttatgcataaacatttatataataagcgtttaattaagt 33823440  T
Q  302 tgttgatccaaacctgattgaaattgattttaccaatgaggatacaatgaaaattctgactggtcattcctgaattgttgttaataatatatcccttctt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33823441 tgttgatccaaacctgattgaaattgattttaccaatgaggataccatgaaaattctgactggtcattcctgaattgttgttaataatatttcccttctt 33823540  T
Q  402 actcaattccaaaccagagaaacaagagtattcattaagaaaaga 446  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  33823541 actcaattccaaaccagagaagcaagagtattcattaagaaaaga 33823585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 31789943 - 31790022
Alignment:
Q  50 accaaccggcaaaactcctctaccaaataagtttgagcgagtaggaagtctagcaagaattaattgccaagagaaaattt 129  Q
    |||||| |||||| ||||||| | | |||||||||||||||| ||||||||| ||| | ||||||| || ||||||||||    
T  31789943 accaactggcaaagctcctcttcaagataagtttgagcgagtcggaagtctaccaaaagttaattgtcatgagaaaattt 31790022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 484
Target Start/End: Original strand, 33823867 - 33823902
Alignment:
Q  449 gtataagaatttcttcttgtatgtgagtagtttttg 484  Q
    ||||||||||||||||||||||||||||||||||||    
T  33823867 gtataagaatttcttcttgtatgtgagtagtttttg 33823902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 10400224 - 10400166
Alignment:
Q  256 aaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||||||||| ||||||||||||||| ||||||  ||||||| |||||| ||||||||    
T  10400224 aaatagcttatacataaacatttatatgataagcccttaattatgttgtttatccaaac 10400166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 2548316 - 2548379
Alignment:
Q  250 ttatagaaatagcttatgcataaaca--tttatataataagcgtttaattaagttgttgatcca 311  Q
    ||||||||||| ||||| ||||||||  | |||||||||| |||||||||||||| || |||||    
T  2548316 ttatagaaataacttatacataaacacttatatataataaacgtttaattaagttatttatcca 2548379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 34786663 - 34786577
Alignment:
Q  50 accaaccggcaaaactcctctaccaaataagtttgagcgagtaggaagtctagcaagaattaattgccaagagaaaatttaaatttt 136  Q
    ||||||||||||  ||||||| | | ||||||||||||| || ||||||||| |||  |||||||||||  ||||||||||||||||    
T  34786663 accaaccggcaacgctcctcttcaagataagtttgagcgtgtcggaagtctaccaaagattaattgccagaagaaaatttaaatttt 34786577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 19422380 - 19422315
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    |||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||| |||| ||||||||    
T  19422380 gttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttatccaaac 19422315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 39635461 - 39635408
Alignment:
Q  76 ataagtttgagcgagtaggaagtctagcaagaattaattgccaagagaaaattt 129  Q
    ||||||||||||||||  |||||||| ||| |||||||||||||||||||||||    
T  39635461 ataagtttgagcgagtcagaagtctaccaaaaattaattgccaagagaaaattt 39635408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 7730557 - 7730513
Alignment:
Q  269 ataaacatttatataataagcgtttaattaagttgttgatccaaa 313  Q
    |||||||||||||||||||| | |||||||||||||| |||||||    
T  7730557 ataaacatttatataataagtgcttaattaagttgtttatccaaa 7730513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 9843775 - 9843839
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||||||||||||||| ||||| || |||||| ||||||  ||| |||||||||| ||||||||    
T  9843775 ttatagaaatagcttatacataagcagttatatgataagcacttatttaagttgtttatccaaac 9843839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 24160603 - 24160659
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgtt 305  Q
    |||||||||| |||||||  |||| || |||||| ||||||||||||||||||||||    
T  24160603 gttatagaaaaagcttatttataagcacttatatgataagcgtttaattaagttgtt 24160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 35752799 - 35752843
Alignment:
Q  89 agtaggaagtctagcaagaattaattgccaagagaaaatttaaat 133  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||    
T  35752799 agtaggaagtctaccaagaattaattaccaagataaaatttaaat 35752843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 24091424 - 24091371
Alignment:
Q  251 tatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgtt 305  Q
    |||||||||||||||||||| | ||||||||| ||||| | ||||||||||||||    
T  24091424 tatagaaatagcttatgcat-agcatttatatgataagtgcttaattaagttgtt 24091371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 55994296 - 55994334
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataag 288  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  55994296 ttatagaaatagcttatacataagcatttatataataag 55994334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 10150716 - 10150652
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||||||||| ||||| |||||||| |||||||||||| | |||||||||||||| ||| ||||    
T  10150716 ttatagaaataacttatacataaacacttatataataagtgcttaattaagttgtttatctaaac 10150652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 26484193 - 26484257
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||||||||||||||| ||||| || |||||| ||||  | |||||||||||||| ||||||||    
T  26484193 ttatagaaatagcttatccataagcacttatatgataaatgattaattaagttgtttatccaaac 26484257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 9478261 - 9478221
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagc 289  Q
    |||||||||||||||||| |||||||| |||||| ||||||    
T  9478261 gttatagaaatagcttatacataaacacttatatgataagc 9478221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 21516301 - 21516255
Alignment:
Q  268 cataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||    
T  21516301 cataaacatttatgttataagcgtttaattaagttgtttatccaaac 21516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 30815743 - 30815809
Alignment:
Q  249 gttatagaaatagcttatgcataaac-atttatataataagcgtttaattaagttgttgatccaaac 314  Q
    |||||||||| ||||||  ||||||  | |||||| ||||||| |||||||||||||||||||||||    
T  30815743 gttatagaaaaagcttagacataaagtaattatatgataagcgcttaattaagttgttgatccaaac 30815809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 40357994 - 40358050
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgtt 305  Q
    |||||||||||||||||| ||||  || |||||||||||||  |||||||| |||||    
T  40357994 gttatagaaatagcttatacatagtcacttatataataagcacttaattaatttgtt 40358050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 40279724 - 40279769
Alignment:
Q  269 ataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||||    
T  40279724 ataaacatttatattataagcgcttaattaaattgttgatccaaac 40279769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 4558759 - 4558715
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataagcgttta 294  Q
    ||||||||||||||||| |||||||| ||| ||||||| ||||||    
T  4558759 ttatagaaatagcttatacataaacacttacataataaacgttta 4558715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 32181310 - 32181262
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataagcgtttaatta 298  Q
    ||||||||||||||||| |||||||||||||  |||||||  |||||||    
T  32181310 ttatagaaatagcttatacataaacatttattcaataagcacttaatta 32181262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 44617893 - 44617941
Alignment:
Q  247 tagttatagaaatagcttatgcataaacatttatataataagcgtttaa 295  Q
    |||||||||||||||||||| |||||||  |||||||| ||| ||||||    
T  44617893 tagttatagaaatagcttatacataaactgttatataacaagtgtttaa 44617941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 40499783 - 40499848
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    |||||||||||| ||| | ||||| || |||||| |||||| ||||||||||||||| ||||||||    
T  40499783 gttatagaaataacttgtacataagcacttatatgataagcttttaattaagttgtttatccaaac 40499848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 11095577 - 11095642
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||||||||||| |||| ||||| || ||||||  |||| ||||| |||||||||| ||||||||    
T  11095577 gttatagaaatagtttatacataatcacttatatggtaagtgtttagttaagttgtttatccaaac 11095642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 15985372 - 15985416
Alignment:
Q  270 taaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||||||||||| ||| ||  |||||||||||||||||||||||    
T  15985372 taaacatttatatgatatgctcttaattaagttgttgatccaaac 15985416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 36638708 - 36638644
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaa 313  Q
    ||||||||||||| |||| ||| ||||  ||||| ||||| | |||||||||||||| |||||||    
T  36638708 gttatagaaatagtttatacattaacacctatatgataagtgcttaattaagttgtttatccaaa 36638644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 35536069 - 35536013
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgtt 305  Q
    |||||||||||||||||| ||||| | ||||||| ||||||| | ||||||||||||    
T  35536069 gttatagaaatagcttatacataagcctttatatgataagcgctcaattaagttgtt 35536013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 33810995 - 33811030
Alignment:
Q  10 atctacaaaacaaatgatcctctacctcttgaatac 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  33810995 atctacaaaacaaatgatcctccacctcttgaatac 33811030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 27481402 - 27481440
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataa 287  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  27481402 gttatagaaatagcttatacataaacacttatataataa 27481440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 44348554 - 44348505
Alignment:
Q  252 atagaaatagcttatgcataaacatttatataataagcgtttaattaagt 301  Q
    ||||||||||||||| | |||||| ||| |||||||||| ||||||||||    
T  44348554 atagaaatagcttatacttaaacacttacataataagcgattaattaagt 44348505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 39539870 - 39539934
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    |||| |||||||||||| || || || |||||| ||||||  |||||||||||||| ||||||||    
T  39539870 ttatcgaaatagcttatacaaaagcagttatatgataagcacttaattaagttgtttatccaaac 39539934  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 47528042 - 47528086
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataagcgttta 294  Q
    ||||||||||||||||| |||||||| || ||||||||| |||||    
T  47528042 ttatagaaatagcttatacataaacacttgtataataagtgttta 47528086  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 44237454 - 44237390
Alignment:
Q  250 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||| ||||||||||||||||| |||||| || | ||||  |||||||||||||| ||||||||    
T  44237454 ttataaaaatagcttatgcataagcatttagatgagaagcccttaattaagttgtttatccaaac 44237390  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 41159073 - 41159006
Alignment:
Q  247 tagttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    ||||||||| |||| ||||| ||||| || |||||  |||||||||||||||||||| | ||||||||    
T  41159073 tagttataggaataacttatacataagcacttatacgataagcgtttaattaagttggttatccaaac 41159006  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 44488846 - 44488796
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaa 299  Q
    |||||||||||||||||| ||||||||  |||| |||||||| ||||||||    
T  44488846 gttatagaaatagcttatacataaacacctatacaataagcgcttaattaa 44488796  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 48528540 - 48528475
Alignment:
Q  249 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 314  Q
    |||||||||||||||||| |||||  | |||||| ||||||  |||||| ||||||| ||||||||    
T  48528540 gttatagaaatagcttatacataagtacttatatgataagctcttaattcagttgtttatccaaac 48528475  T

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