View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12945_low_1 (Length: 634)
Name: NF12945_low_1
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12945_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 528
Target Start/End: Complemental strand, 51739552 - 51739037
Alignment:
| Q |
16 |
ctaccaagctcactaaacgtagattacgcaatgcgtattgaatattcatctctaagccaaataaaaacatgaaatttattcgacaaaagaagctcacaac |
115 |
Q |
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| T |
51739552 |
ctaccaagctcactaaacgtagattacgcaatgcgtattgaatattcatctctaagccaaataaaaacatgaaatttattcgacaaaagaagctcacaac |
51739453 |
T |
|
| Q |
116 |
ttcgtagtaattcatggaattggcaggaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaataccaaccctgcctgtaattcaacaatg |
215 |
Q |
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| T |
51739452 |
ttcgtagtaattcatggaattggcaggaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaataccaaccctgcctgtaattcaacaatg |
51739353 |
T |
|
| Q |
216 |
caatcaatgcattaataattgaaaacttcaatgtaa-ataaataatgtag---aatgaaacaataactaatcaattaccagaatttgtgcaacgggtcca |
311 |
Q |
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| T |
51739352 |
caatcaatgcattaataattgaaaacttcaattcaatgtaaataatgtagattaatgaaacaataactaatcaattaccagaatttgtgcaacgggtcca |
51739253 |
T |
|
| Q |
312 |
ggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgcccattgagtatagagggttaactagttctt |
411 |
Q |
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| T |
51739252 |
ggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgcccattgagtatagagggttaactagttctt |
51739153 |
T |
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| Q |
412 |
tattacaaaacattttgtgtgtggcatccattgtgtgcatttaatgtgtttgtcaaaacttcaatcaataaattagacaaagaaaggaatctgatatgaa |
511 |
Q |
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| T |
51739152 |
tattacaaaacattttgtgggtggcatccattgtgtggatttaatgtttttgtcaaaac-tcaatcaataaattagacaaagaaaggaatctgatatgaa |
51739054 |
T |
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| Q |
512 |
attttacgttttaacaa |
528 |
Q |
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| T |
51739053 |
attttacgttttaacaa |
51739037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 10200216 - 10200041
Alignment:
| Q |
42 |
cgcaatgcgtattgaatattcatctctaagccaaataaaaacatgaaatttattcgacaaaagaagctcacaacttcgtagtaattcatggaattggcag |
141 |
Q |
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| T |
10200216 |
cgcaatgtgtagtgaatattcatttccaagccaaataaaaacatgaaatttatgcgacaaaagaagctcactacttgatagtaatttatggaactggctg |
10200117 |
T |
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| Q |
142 |
gaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaataccaaccctgcctgtaattcaacaatgcaat |
219 |
Q |
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| T |
10200116 |
gaaagaatgtctcttttatatatggaatatgagacattggacctaatatcaacccagcctgt--ttcaacaatgcaat |
10200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 285 - 424
Target Start/End: Complemental strand, 10199709 - 10199570
Alignment:
| Q |
285 |
attaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgccca |
384 |
Q |
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| T |
10199709 |
attaccagaatttgtgcaatgggtccaggttggcccatagtcctaagaacaacgttgaagaagtgtgacacaacaagaatgcatgacacttgcataccca |
10199610 |
T |
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| Q |
385 |
ttgagtatagagggttaactagttctttattacaaaacat |
424 |
Q |
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| T |
10199609 |
tagaacttagagggttaacaagatcatcgttacaaaacat |
10199570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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