View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12945_low_11 (Length: 226)
Name: NF12945_low_11
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12945_low_11 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11468418 - 11468207
Alignment:
| Q |
1 |
atgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468418 |
atgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagatt |
11468319 |
T |
|
| Q |
101 |
ctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgtagctatgtgtttgagggttt |
200 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
11468318 |
ctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagccatgtgtttgagggttt |
11468219 |
T |
|
| Q |
201 |
ggagtctttggt |
212 |
Q |
| |
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||| |||||||| |
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| T |
11468218 |
ggaatctttggt |
11468207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11523043 - 11523254
Alignment:
| Q |
1 |
atgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11523043 |
atgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagatt |
11523142 |
T |
|
| Q |
101 |
ctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgtagctatgtgtttgagggttt |
200 |
Q |
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| T |
11523143 |
ctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagccatgtgtttgagggttt |
11523242 |
T |
|
| Q |
201 |
ggagtctttggt |
212 |
Q |
| |
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||| |||||||| |
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| T |
11523243 |
ggaatctttggt |
11523254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 11445427 - 11445222
Alignment:
| Q |
2 |
tgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattc |
101 |
Q |
| |
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||||||||||||||||||||||| || | ||||| ||||| || || | ||| || |||| || |||||||||| ||| ||||||||||||| | |
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| T |
11445427 |
tgtggcactcctctaagaaatggctcactgaggacaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatac |
11445328 |
T |
|
| Q |
102 |
tgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgtagctatgtgtttgagggtttg |
201 |
Q |
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|||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| || || |||||||| || || || | |||||||||| |||||| |
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| T |
11445327 |
tgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttg |
11445228 |
T |
|
| Q |
202 |
gagtct |
207 |
Q |
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|||||| |
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| T |
11445227 |
gagtct |
11445222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 11547663 - 11547868
Alignment:
| Q |
2 |
tgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattc |
101 |
Q |
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||||||||||||||||||||||| || | ||||| ||||| || || | ||| || |||| || |||||||||| ||| ||||||||||||| | |
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| T |
11547663 |
tgtggcactcctctaagaaatggctcactgaggacaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatac |
11547762 |
T |
|
| Q |
102 |
tgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgtagctatgtgtttgagggtttg |
201 |
Q |
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|||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| || || |||||||| || || || | |||||||||| |||||| |
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| T |
11547763 |
tgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttg |
11547862 |
T |
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| Q |
202 |
gagtct |
207 |
Q |
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|||||| |
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| T |
11547863 |
gagtct |
11547868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 11507500 - 11507637
Alignment:
| Q |
70 |
gagacattttttaactttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctc |
169 |
Q |
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|||||||||| ||| ||||||||||||| ||||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| || || ||||||| |
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| T |
11507500 |
gagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctc |
11507599 |
T |
|
| Q |
170 |
tcaaggactgtagctatgtgtttgagggtttggagtct |
207 |
Q |
| |
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| || || || | |||||||||| |||||| ||||| |
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| T |
11507600 |
taaaagagtgcaatcatgtgtttgaaggtttgaagtct |
11507637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 34784321 - 34784406
Alignment:
| Q |
85 |
tttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctct |
170 |
Q |
| |
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||||||||||||||||||||||||| || | ||||||||||||| || ||||| |||||||| |||||||||||||||||| |
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| T |
34784321 |
tttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctct |
34784406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 2157 - 2294
Alignment:
| Q |
70 |
gagacattttttaactttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctc |
169 |
Q |
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|||||||||| ||| ||||||||||||| ||||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| || || ||||||| |
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| T |
2157 |
gagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctc |
2256 |
T |
|
| Q |
170 |
tcaaggactgtagctatgtgtttgagggtttggagtct |
207 |
Q |
| |
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| || || || | |||||||||| ||||||| |||| |
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| T |
2257 |
taaaagagtgcaatcatgtgtttgaaggtttggggtct |
2294 |
T |
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