View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12945_low_2 (Length: 610)

Name: NF12945_low_2
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12945_low_2
NF12945_low_2
[»] chr1 (20 HSPs)
chr1 (20-602)||(33987657-33988235)
chr1 (425-575)||(14654309-14654458)
chr1 (425-575)||(14664100-14664249)
chr1 (425-586)||(14708567-14708727)
chr1 (429-600)||(38175474-38175644)
chr1 (425-555)||(14669698-14669827)
chr1 (425-555)||(14706077-14706206)
chr1 (426-575)||(14674471-14674619)
chr1 (436-575)||(14652525-14652663)
chr1 (436-575)||(14662316-14662454)
chr1 (429-575)||(14681592-14681737)
chr1 (429-555)||(14683743-14683868)
chr1 (425-555)||(14716280-14716409)
chr1 (426-575)||(14679849-14679997)
chr1 (427-575)||(28366167-28366315)
chr1 (439-578)||(11872446-11872585)
chr1 (429-517)||(14676625-14676713)
chr1 (433-554)||(14667101-14667221)
chr1 (442-503)||(37422175-37422236)
chr1 (432-503)||(28698549-28698620)
[»] chr2 (34 HSPs)
chr2 (24-602)||(9026381-9026952)
chr2 (24-600)||(9020453-9021011)
chr2 (64-555)||(8988084-8988574)
chr2 (81-503)||(9031707-9032120)
chr2 (175-585)||(9016238-9016645)
chr2 (320-589)||(8973195-8973465)
chr2 (311-600)||(9030274-9030557)
chr2 (332-573)||(8984588-8984830)
chr2 (433-602)||(9008018-9008187)
chr2 (307-550)||(8992018-8992262)
chr2 (307-588)||(9023319-9023585)
chr2 (167-416)||(8996098-8996339)
chr2 (352-509)||(8979237-8979395)
chr2 (139-304)||(9023133-9023294)
chr2 (429-601)||(43850042-43850213)
chr2 (430-575)||(32918074-32918218)
chr2 (143-272)||(8991882-8992013)
chr2 (361-553)||(2841008-2841201)
chr2 (438-589)||(19232355-19232504)
chr2 (425-551)||(30731997-30732122)
chr2 (142-272)||(8973044-8973176)
chr2 (433-596)||(30733985-30734147)
chr2 (186-465)||(8975440-8975724)
chr2 (325-381)||(9007956-9008012)
chr2 (177-272)||(9030166-9030262)
chr2 (20-105)||(8975316-8975399)
chr2 (528-601)||(8913027-8913100)
chr2 (443-544)||(10763878-10763978)
chr2 (77-139)||(8996030-8996092)
chr2 (438-503)||(6471749-6471813)
chr2 (440-503)||(35701893-35701956)
chr2 (489-572)||(8996343-8996426)
chr2 (439-474)||(39814115-39814150)
chr2 (467-580)||(17275862-17275974)
[»] chr4 (13 HSPs)
chr4 (361-601)||(3461085-3461325)
chr4 (361-600)||(11652336-11652575)
chr4 (427-587)||(50077156-50077315)
chr4 (428-554)||(49106519-49106644)
chr4 (429-579)||(49108598-49108747)
chr4 (437-555)||(26998729-26998846)
chr4 (437-543)||(26984668-26984773)
chr4 (464-601)||(21503706-21503842)
chr4 (437-498)||(48205832-48205893)
chr4 (443-496)||(6431957-6432010)
chr4 (438-503)||(41013586-41013651)
chr4 (443-482)||(26982549-26982588)
chr4 (441-477)||(34481155-34481191)
[»] chr8 (12 HSPs)
chr8 (361-600)||(41841096-41841335)
chr8 (436-600)||(40054312-40054475)
chr8 (430-578)||(44878977-44879124)
chr8 (430-578)||(44880797-44880944)
chr8 (433-575)||(10944368-10944509)
chr8 (361-503)||(42555123-42555266)
chr8 (438-580)||(37679757-37679898)
chr8 (436-589)||(37682057-37682209)
chr8 (361-503)||(42220886-42221027)
chr8 (360-503)||(42091944-42092087)
chr8 (429-479)||(42872514-42872564)
chr8 (453-503)||(44582870-44582920)
[»] chr6 (5 HSPs)
chr6 (427-587)||(10795847-10796006)
chr6 (427-587)||(10791609-10791768)
chr6 (436-594)||(30521242-30521399)
chr6 (438-503)||(8875691-8875756)
chr6 (443-543)||(21216032-21216131)
[»] chr5 (7 HSPs)
chr5 (361-554)||(1716441-1716634)
chr5 (395-586)||(3643599-3643789)
chr5 (429-555)||(7524961-7525086)
chr5 (440-555)||(4103249-4103363)
chr5 (438-546)||(16037861-16037966)
chr5 (21-134)||(3643056-3643164)
chr5 (443-503)||(19261156-19261216)
[»] chr7 (2 HSPs)
chr7 (436-587)||(27134511-27134661)
chr7 (442-555)||(8128149-8128260)
[»] chr3 (1 HSPs)
chr3 (438-484)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (528-597)||(5487-5556)


Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 602
Target Start/End: Original strand, 33987657 - 33988235
Alignment:
Q  20 cctactacatcacagtttcaattcttaagagtattttggcaaataattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaa 119  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| ||||| ||||||||||||     
T  33987657 cctactacatcgcagtttgaattcttaagagtattttggcatataattctaacagacacgcacaactgtggcactcaaaa-caaatgaatgaacacaaag 33987755  T
Q  120 atgaaagatataatagccttagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaa 219  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||    
T  33987756 atgaaagatataatagccttacccggttagtccatcaacaaaagcaagggataagataagaatcagatcatgatattttgctgtaagacaagaatattaa 33987855  T
Q  220 tttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaa 319  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||||||    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  33987856 tttaatttttggcaattcatcatgatggactatgtgtatgtatctactct----gattgatgataatgttttaagaataaagaaaacaaaggaggaagaa 33987951  T
Q  320 agtgttaggaagagagtttaccaagcaa-gctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataa 417  Q
    |||||||||||||||||||| || ||||  || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||    
T  33987952 agtgttaggaagagagtttaacatgcaaccctgtttcaaaaaagtcccacatcggttgttcaagaaagcaagtgaagggaggtgatatataaaagcataa 33988051  T
Q  418 gcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgg 517  Q
    | |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||     
T  33988052 gtgagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatga 33988151  T
Q  518 gccacaacagtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgct 602  Q
    | ||| ||  ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  33988152 gtcac-acgatattaaattacttttttaagggggagaggccatttcaatagcttgctattgggtttttcaagtgtcgcttatgct 33988235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 425 - 575
Target Start/End: Complemental strand, 14654458 - 14654309
Alignment:
Q  425 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14654458 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14654360  T
Q  525 cagtattaaattacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    |  |||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  14654359 cgatattaaattacttttttgagggggagaggccacttcagtagcttgcta 14654309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 425 - 575
Target Start/End: Complemental strand, 14664249 - 14664100
Alignment:
Q  425 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14664249 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14664151  T
Q  525 cagtattaaattacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    |  |||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  14664150 cgatattaaattacttttttgagggggagaggccacttcagtagcttgcta 14664100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 425 - 586
Target Start/End: Original strand, 14708567 - 14708727
Alignment:
Q  425 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14708567 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14708665  T
Q  525 cagtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctc 586  Q
    |  ||||||||||||||||||||||||||||  || || | |||||||||||| || |||||    
T  14708666 cgatattaaattacttttttgagggggagaggtcactttagtagcttgctattaggcttctc 14708727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 429 - 600
Target Start/End: Complemental strand, 38175644 - 38175474
Alignment:
Q  429 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||| ||| ||  |    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcac-acgat 38175546  T
Q  529 attaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatg 600  Q
    |||||||||||||||||||||||||| ||||  ||| |||||||||  ||||||| ||| | ||||| ||||    
T  38175545 attaaattacttttttgagggggagaaaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatg 38175474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 425 - 555
Target Start/End: Complemental strand, 14669827 - 14669698
Alignment:
Q  425 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14669827 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14669729  T
Q  525 cagtattaaattacttttttgagggggagag 555  Q
    |  ||||||||||||||||||||||||||||    
T  14669728 cgatattaaattacttttttgagggggagag 14669698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 425 - 555
Target Start/End: Original strand, 14706077 - 14706206
Alignment:
Q  425 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14706077 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14706175  T
Q  525 cagtattaaattacttttttgagggggagag 555  Q
    |  ||||||||||||||||||||||||||||    
T  14706176 cgatattaaattacttttttgagggggagag 14706206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 426 - 575
Target Start/End: Original strand, 14674471 - 14674619
Alignment:
Q  426 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaac 525  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||      
T  14674471 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14674570  T
Q  526 agtattaaattacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    | |||||||||||||||||||||||||||  |||||| | ||||||||||    
T  14674571 a-tattaaattacttttttgagggggagaagccattttagtagcttgcta 14674619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 436 - 575
Target Start/End: Original strand, 14652525 - 14652663
Alignment:
Q  436 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaat 14652623  T
Q  536 tacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    |||||||||||||||||||  |||||| | ||||||||||    
T  14652624 tacttttttgagggggagaagccattttagtagcttgcta 14652663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 436 - 575
Target Start/End: Original strand, 14662316 - 14662454
Alignment:
Q  436 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaat 14662414  T
Q  536 tacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    |||||||||||||||||||  |||||| | ||||||||||    
T  14662415 tacttttttgagggggagaagccattttagtagcttgcta 14662454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 429 - 575
Target Start/End: Original strand, 14681592 - 14681737
Alignment:
Q  429 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 528  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||  |    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgat 14681690  T
Q  529 attaaattacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    ||||||||||||||||||||||||||  |||||| | ||||||||||    
T  14681691 attaaattacttttttgagggggagaagccattttagtagcttgcta 14681737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 429 - 555
Target Start/End: Original strand, 14683743 - 14683868
Alignment:
Q  429 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||  |    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgat 14683841  T
Q  529 attaaattacttttttgagggggagag 555  Q
    |||||||||||||||||||||||||||    
T  14683842 attaaattacttttttgagggggagag 14683868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 425 - 555
Target Start/End: Original strand, 14716280 - 14716409
Alignment:
Q  425 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| |||||||  ||| |    
T  14716280 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcac-a 14716378  T
Q  525 cagtattaaattacttttttgagggggagag 555  Q
    |  ||||||||||||||||||||||||||||    
T  14716379 cgatattaaattacttttttgagggggagag 14716409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 426 - 575
Target Start/End: Original strand, 14679849 - 14679997
Alignment:
Q  426 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaac 525  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||      
T  14679849 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14679948  T
Q  526 agtattaaattacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    | |||||||||||||||||||||||||||  |||| | | ||||||||||    
T  14679949 a-tattaaattacttttttgagggggagaagccatattagtagcttgcta 14679997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 427 - 575
Target Start/End: Complemental strand, 28366315 - 28366167
Alignment:
Q  427 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtg-gcccaatgggccacaac 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  ||||||||| ||| ||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcac-ac 28366217  T
Q  526 agtattaaattacttttttgagggggagagaccatttcaatagcttgcta 575  Q
      ||||||||||||||||| |||||||||||| |||  | ||||||||||    
T  28366216 gatattaaattacttttttaagggggagagactattatagtagcttgcta 28366167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 439 - 578
Target Start/End: Complemental strand, 11872585 - 11872446
Alignment:
Q  439 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattac 538  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||  ||||  ||||||| ||| ||  |||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcac-acgatattaaattac 11872487  T
Q  539 -ttttttgagggggagagaccatttcaatagcttgctattg 578  Q
     |||||| |||||||||| ||||||| ||||||||||||||    
T  11872486 tttttttaagggggagaggccatttcgatagcttgctattg 11872446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 429 - 517
Target Start/End: Original strand, 14676625 - 14676713
Alignment:
Q  429 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgg 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatgg 14676713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 433 - 554
Target Start/End: Complemental strand, 14667221 - 14667101
Alignment:
Q  433 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||| |||||||  ||||  | |||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatga-tatta 14667123  T
Q  533 aattacttttttgagggggaga 554  Q
    |||||||||||  |||||||||    
T  14667122 aattactttttctagggggaga 14667101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 37422175 - 37422236
Alignment:
Q  442 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgat 37422236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 432 - 503
Target Start/End: Original strand, 28698549 - 28698620
Alignment:
Q  432 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||| |||||||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgat 28698620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 24 - 602
Target Start/End: Original strand, 9026381 - 9026952
Alignment:
Q  24 ctacatcacagtttcaattcttaa--gagtattttggcaaataattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaat 121  Q
    |||||||||||||| |||||||||  ||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||    
T  9026381 ctacatcacagtttgaattcttaaaagagtattttggaatataatactaacagacacacacaacagtggcactcaaaaacaaatgaatgaacacaaagat 9026480  T
Q  122 gaaagatataatagccttagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatt 221  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  9026481 gaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaaaagaataagatcatgatattttgctttaagacaagaatatcaatt 9026580  T
Q  222 taatttttggcaaatcaccatgatggcctatgtgtatgtatct--actctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaa 319  Q
    ||||||||||||| ||| || |||||||||||||| ||||| |  ||||||||    |||||| ||||| ||||||||||||||| ||||| |     ||    
T  9026581 taatttttggcaattcatcacgatggcctatgtgtgtgtatttttactctgat----tgatgataatgttttaagaataaagaaatcaaagaa-----aa 9026671  T
Q  320 agtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataag 418  Q
    ||    ||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||| ||||||    
T  9026672 agg---aggaagaaagtctaccaagcaagctgtttcaaaaaagtcccatatcggttgttcaagaaagcaagtgaagggatgtggtatataaaagcataag 9026768  T
Q  419 cgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatggg 518  Q
    |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9026769 cgaattcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatggg 9026868  T
Q  519 ccacaacagtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgct 602  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9026869 tcacaacagtattaaattacttttttgagtgggagagaccatttcaatagcttgctattgggtttctcaagtgtcgcctatgct 9026952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 24 - 600
Target Start/End: Original strand, 9020453 - 9021011
Alignment:
Q  24 ctacatcacagtttcaattcttaagagtattttggcaaataattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatga 123  Q
    |||||||||||||  |||||||||||| |||||| || | |||||||||| | |||||||| |||||||||||||||||||| |||||||||||| ||||    
T  9020453 ctacatcacagttagaattcttaagagcattttgtcatacaattctaacaaacacacacaatagtggcactcaaaaacaaatgaatgaacacaaagatga 9020552  T
Q  124 aagatataatagccttagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaattta 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  9020553 aagatataatacccttagccggttagcccatcaacaaaagcaaggaataagataagaatccgatcatgatattttgctttaagacgagaatatcaattta 9020652  T
Q  224 atttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtg 323  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||    | ||||||||| ||||| ||||||||||||||||||||||||||| ||        
T  9020653 atttttggcaattcaccatg-tggccaatgtgtatgtatctact----ttgattgatgataatgttttaagaataaagaaaacaaaggaggaaaaa---- 9020743  T
Q  324 ttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgag 422  Q
              |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  9020744 ----------agtttaccaagcaagctatttcaaaaaagtcctacatcggttgttcatgaaagcaagtgaatggatgtgatatataaaaccataagcgag 9020833  T
Q  423 aacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccac 522  Q
      |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||   ||||||||||||| |||    
T  9020834 ttcatctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcac 9020933  T
Q  523 aacagtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatg 600  Q
     |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||| ||| ||||||    
T  9020934 tacagtattaaattacttttttgagggtgagaggccatttcaataacttgctattgggcttctcaagtgtcacctatg 9021011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 64 - 555
Target Start/End: Original strand, 8988084 - 8988574
Alignment:
Q  64 aattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaag 163  Q
    |||| ||||||| ||||||||||||||| ||||||||| |||    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8988084 aattataacagacacacacaacagtggctctcaaaaacgaat----gaacacaaagatgaaagatataatagccttagccggttagcccatcaacaaaag 8988179  T
Q  164 caagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||      
T  8988180 caagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaattttatttttggcaattcatcatgatggcctatgtgtatgtact 8988279  T
Q  264 tactctgata-gattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgtt--aggaagagagtttaccaagcaagctatttcaaaaa 360  Q
    |||  |  || ||||||||| ||||| |||||||||| |||||||||||||||||||||||||  |||||| |||| ||||||||||| | ||||||||     
T  8988280 tacg-tactatgattgatgataatgttttaagaataaggaaaacaaaggaggaagaaagtgttttaggaagtgagtctaccaagcaagttgtttcaaaat 8988378  T
Q  361 agtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 459  Q
    ||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||||||||  |||||||||||| ||||| |||| |||||||||||    
T  8988379 agtcccacatcgactgttcaagaaagcaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaacttataccattcttggccttttggc 8988478  T
Q  460 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagag 555  Q
     ||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||  | ||||| |||||||||||||||||||||| |||||    
T  8988479 gaagatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaatattaaattacttttttgagggtgagag 8988574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 81 - 503
Target Start/End: Original strand, 9031707 - 9032120
Alignment:
Q  81 acaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagcaagggataagataaga 180  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  9031707 acaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaaaaga 9031806  T
Q  181 atcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgta--tctactctgatagattg 278  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||  | ||||||    |||||    
T  9031807 ataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgtatttttactct----gattg 9031902  T
Q  279 atgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgtt 378  Q
    |||| ||||| ||||||||||||||| |||||     | ||||    ||||||| ||| ||||||||||||| ||||||||||||| || |||| |||||    
T  9031903 atgataatgttttaagaataaagaaatcaaag-----aaaaag---gaggaagaaagtctaccaagcaagctgtttcaaaaaagtctcatatcgattgtt 9031994  T
Q  379 catgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtat 477  Q
    || ||||||||||| ||||||||| ||||||||| |||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9031995 caagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtat 9032094  T
Q  478 ctgttcttatcagtttaatatttgat 503  Q
    ||||||||||||||||||||| ||||    
T  9032095 ctgttcttatcagtttaatatctgat 9032120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 175 - 585
Target Start/End: Original strand, 9016238 - 9016645
Alignment:
Q  175 ataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatag 274  Q
    |||||| |||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||  ||  ||||| |||||||||||| ||||||         
T  9016238 ataagagtcagatcatgatattttgctataagacaagaatatcaatttaatttttttcaattcataatcgtggcccatgtgtatgtatttactct----a 9016333  T
Q  275 attgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggt 374  Q
    |||||||| ||||| |||||||||||| |||||||| || | ||||||||||||||||||   ||||||||| ||| ||||||| | |||||||||| ||    
T  9016334 attgatgataatgttttaagaataaag-aaacaaagtagaacgaaagtgttaggaagaga--ctaccaagcatgctgtttcaaagatgtcccacatcagt 9016430  T
Q  375 tgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgta 473  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||||||||  ||||||| ||||||||||||  ||| |||||||||||||||||| ||||    
T  9016431 tgttcaagaaagcaagtgaaaggatgtgatatataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgta 9016530  T
Q  474 gtatctgttcttatc---agtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagagaccatttcaatagct 570  Q
    |||||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9016531 gtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgagggggagagacaatttcaatagct 9016630  T
Q  571 tgctattgggtttct 585  Q
    ||||||||| |||||    
T  9016631 tgctattggatttct 9016645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 320 - 589
Target Start/End: Original strand, 8973195 - 8973465
Alignment:
Q  320 agtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataag 418  Q
    ||||||||||||||||| |||||||||| || |||||||||||| |||||||| || |||  ||||| |||||| |||||||||||||||||| ||||||    
T  8973195 agtgttaggaagagagtctaccaagcaaactgtttcaaaaaagttccacatcgattattccagaaagtaagtgaagggatgtgatatataaaagcataag 8973294  T
Q  419 cgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatggg 518  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  8973295 cgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatggg 8973394  T
Q  519 ccacaacagtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaag 589  Q
     ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  8973395 tcacaacaatattaaattacttttttaagggggagagaccatttcaatagcttgctgttgggtttctcaag 8973465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 311 - 600
Target Start/End: Original strand, 9030274 - 9030557
Alignment:
Q  311 gaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataa 409  Q
    |||||||||||||||||||||||  | ||||||||||||| |||||| ||||||||||||||  |||||| ||| |||||||| ||||||||||||||||    
T  9030274 gaggaagaaagtgttaggaagag--tctaccaagcaagctgtttcaagaaagtcccacatcgactgttcaagaatgcaagtgaagggatgtgatatataa 9030371  T
Q  410 aaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg 509  Q
    || ||||||| ||  ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||    
T  9030372 aagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtgg 9030471  T
Q  510 cccaatgggccacaacagtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatg 600  Q
    | ||||||| ||| ||||||||||||||||||||||||||||||||     |||||||||||||||||||| |||||||| ||||||||||    
T  9030472 ctcaatgggtcac-acagtattaaattacttttttgagggggagag----gttcaatagcttgctattgggcttctcaagtgtcgcctatg 9030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 332 - 573
Target Start/End: Original strand, 8984588 - 8984830
Alignment:
Q  332 agagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctt 430  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||| ||  ||| ||    
T  8984588 agagtctaccaaacaagctatttcaaaaaagtcccacatcggttgttcaagaaaacaagtgaagggatgtgatatataaaagcataagcaagttcatatt 8984687  T
Q  431 tcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtat 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||  || |    
T  8984688 tcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgattagtggcctaatgggtcacaatggttt 8984787  T
Q  531 taaattacttttttgagggggagagaccatttcaatagcttgc 573  Q
    |||||| |||||||||| || |||  |||||||||||||||||    
T  8984788 taaattgcttttttgagaggtagatgccatttcaatagcttgc 8984830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 433 - 602
Target Start/End: Original strand, 9008018 - 9008187
Alignment:
Q  433 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  533 aattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgct 602  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||    
T  9008118 aattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgct 9008187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 307 - 550
Target Start/End: Original strand, 8992018 - 8992262
Alignment:
Q  307 aaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatat 405  Q
    ||||||| |||| ||||||||||||||||| |||||||||| || ||||||||||||||||||| |||| |||| ||||| |||||| ||||||||||||    
T  8992018 aaaggagaaagagagtgttaggaagagagtctaccaagcaaactgtttcaaaaaagtcccacattggttattcaagaaagtaagtgaagggatgtgatat 8992117  T
Q  406 ataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgatta 505  Q
    |||||| ||||||||||  | ||||| ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  8992118 ataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgatta 8992217  T
Q  506 gtggcccaatgggccacaacagtattaaattacttttttgagggg 550  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||    
T  8992218 gtggcccaatgggtcacaataatattaaattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 307 - 588
Target Start/End: Original strand, 9023319 - 9023585
Alignment:
Q  307 aaaggaggaagaaagtgtt--aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtgagg-gatgtgat 403  Q
    |||||||||||||||||||  ||||||||||| ||||||||||    ||  ||||||||||||||||||||||||| |||| ||||||| | ||||||||    
T  9023319 aaaggaggaagaaagtgttttaggaagagagtctaccaagcaa----ttcaaaaaaagtcccacatcggttgttcaagaaatcaagtgaagagatgtgat 9023414  T
Q  404 atataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T
Q  504 tagtggcccaatgggccacaacagtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaa 588  Q
    ||||||||||||||         ||||||||     |||||||||||||||| |  ||||||||||||||||||||| |||||||    
T  9023515 tagtggcccaatgg---------gtattaaa-----tttttgagggggagaggctttttcaatagcttgctattgggcttctcaa 9023585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 167 - 416
Target Start/End: Original strand, 8996098 - 8996339
Alignment:
Q  167 gggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctac 266  Q
    ||||||||||| |||||||||||| ||||||||| |       ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8996098 gggataagatacgaatcagatcataatattttgctt-------agaatattaatttaatttttggcaattcaccatgatggcctatgtttatgtatctac 8996190  T
Q  267 tctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtg--ttaggaagagagtttaccaagcaagctatttcaaaaaagtc 364  Q
    | |    ||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| | |||||||| ||||    
T  8996191 tat----gattgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttttaggaagagagtctaccaagcaagttgtttcaaaatagtc 8996286  T
Q  365 ccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccata 416  Q
    ||||||||  |||||| |||||||| || ||||||||||||||||||| ||||    
T  8996287 ccacatcgactgttcaagaaagcaactgaagggatgtgatatataaaagcata 8996339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 352 - 509
Target Start/End: Original strand, 8979237 - 8979395
Alignment:
Q  352 tttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcgg 450  Q
    ||||||||||||||||||| ||||||||| | || ||||||| ||||  |||||||||||| ||||||| ||  ||||||||||||||||||||||||||    
T  8979237 tttcaaaaaagtcccacattggttgttcaaggaatcaagtgaagggacttgatatataaaagcataagcaagttcatctttcaactcatacctttctcgg 8979336  T
Q  451 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979337 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg 8979395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 139 - 304
Target Start/End: Original strand, 9023133 - 9023294
Alignment:
Q  139 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||    
T  9023133 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatactttgctttaagtcaagaatatcaatttaatttttggcaattca 9023232  T
Q  239 ccatgatggcctatgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaa 304  Q
     | |||||||||| |||||||||| |||| |    ||||||| | ||||| |||||||||||||||    
T  9023233 tcgtgatggcctaggtgtatgtatttactat----gattgatcataatgttttaagaataaagaaa 9023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 429 - 601
Target Start/End: Original strand, 43850042 - 43850213
Alignment:
Q  429 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| | ||||  | |    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatga-t 43850140  T
Q  529 attaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgc 601  Q
    ||||||| |||||||||||||||||||  || |||||||||||||||||||  |||| | | |||||||||||    
T  43850141 attaaatcacttttttgagggggagaggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgc 43850213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 430 - 575
Target Start/End: Original strand, 32918074 - 32918218
Alignment:
Q  430 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagta 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgata 32918172  T
Q  530 ttaaattacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    |||||||||||||||||||||||||  ||||| || ||||||||||    
T  32918173 ttaaattacttttttgagggggagaagccattgcagtagcttgcta 32918218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 143 - 272
Target Start/End: Original strand, 8991882 - 8992013
Alignment:
Q  143 cggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttg--gcaaatcacc 240  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||| |||      
T  8991882 cggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatatcaatttaatttttgcttcaattcata 8991981  T
Q  241 atgatggcctatgtgtatgtatctactctgat 272  Q
    |||||||||||||||||||||| |||||||||    
T  8991982 atgatggcctatgtgtatgtatttactctgat 8992013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 361 - 553
Target Start/End: Complemental strand, 2841201 - 2841008
Alignment:
Q  361 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaa-ctcatacctttctcggccttttgg 458  Q
    |||||||||||||||||| | ||||||||||||| |||||||| |||||||| || | |||||  | | ||| |  ||||||||||||||||||||||||    
T  2841201 agtcccacatcggttgttgaagaaagcaagtgagtggatgtgagatataaaagcagacgcgagcccctttttaactctcatacctttctcggccttttgg 2841102  T
Q  459 ctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggag 553  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||  ||||||  ||| ||  ||||||||||||||||||||||||||    
T  2841101 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcac-acgatattaaattacttttttgagggggag 2841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 438 - 589
Target Start/End: Complemental strand, 19232504 - 19232355
Alignment:
Q  438 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatta 537  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||  ||| |||| |||| ||| ||| ||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcac-acaatattaaatta 19232407  T
Q  538 cttttttgagggggagagaccatttcaatagcttgctattgggtttctcaag 589  Q
    | |||||||||||||||  ||| |||||||||||||||||||| ||||||||    
T  19232406 cctttttgagggggagaagccacttcaatagcttgctattgggcttctcaag 19232355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 425 - 551
Target Start/End: Original strand, 30731997 - 30732122
Alignment:
Q  425 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| |||||||  ||| |    
T  30731997 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcac-a 30732095  T
Q  525 cagtattaaattacttttttgaggggg 551  Q
    |  ||||||||||||||||||||||||    
T  30732096 cgatattaaattacttttttgaggggg 30732122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 142 - 272
Target Start/End: Original strand, 8973044 - 8973176
Alignment:
Q  142 ccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttg--gcaaatcac 239  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||   ||| |||     
T  8973044 ccggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgcttcaagacaagaatatcaatttaatttttgcttcaattcat 8973143  T
Q  240 catgatggcctatgtgtatgtatctactctgat 272  Q
     ||| ||||||||||||| |||| |||||||||    
T  8973144 aatggtggcctatgtgtaagtatttactctgat 8973176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 433 - 596
Target Start/End: Original strand, 30733985 - 30734147
Alignment:
Q  433 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 532  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||  | |||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatga-tatta 30734083  T
Q  533 aattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcc 596  Q
    |||||||||||| |||||||||  |||||| | |||||||||| | || ||||| || ||||||    
T  30734084 aattactttttttagggggagaagccattttagtagcttgctactaggcttctcgagtgtcgcc 30734147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 186 - 465
Target Start/End: Original strand, 8975440 - 8975724
Alignment:
Q  186 atcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatagattgatgacaa 285  Q
    |||||||||||||   ||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||    |||||| ||    
T  8975440 atcatgatatttttgtttaagactagaatatcaatttaattgttggcaattcatcatgatggcctatgtgtatgtatttactctgat----tgatgataa 8975535  T
Q  286 tgtattaagaataaagaaa------acaaaggagg---aagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttg 376  Q
    ||| |||||||||| ||||      | ||| ||     |||| |  |  ||||||||||||||||||||||| | ||||||||||||||| ||||   ||    
T  8975536 tgttttaagaataacgaaatttgtaagaaaagaaatcaaagataaagg-aggaagagagtttaccaagcaagttgtttcaaaaaagtcccccatcaactg 8975634  T
Q  377 ttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagat 465  Q
    || | |||| ||||||| |||||||||||||||||| ||||||||||  || |||||||||||||  |||||  ||||||||||||||||    
T  8975635 tttaagaaatcaagtgaagggatgtgatatataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 9007956 - 9008012
Alignment:
Q  325 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007956 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 9008012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 9030166 - 9030262
Alignment:
Q  177 aagaatcagatcatgatattttgccttaagacaagaatatcaatttaa-tttttggcaaatcaccatgatggcctatgtgtatgtatctactctgat 272  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| | ||| |||||||||    
T  9030166 aagaatcagatcgtgatatttggctttaagacaagaatatcaatttaattttttgacaattcatcatgatggcctatgtgtgtctatttactctgat 9030262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 8975316 - 8975399
Alignment:
Q  20 cctactacatcacagtttcaattcttaagagtattttggcaaataattctaacagaaacacacaacagtggcactcaaaaacaaat 105  Q
    |||||||||||||||||| |||||||||||| || |||||| |||||||||||||  ||||||||| ||||| |||||||||||||    
T  8975316 cctactacatcacagtttgaattcttaagagcatgttggcatataattctaacag--acacacaactgtggctctcaaaaacaaat 8975399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 528 - 601
Target Start/End: Original strand, 8913027 - 8913100
Alignment:
Q  528 tattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgc 601  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||   |||||||||||    
T  8913027 tattaaattacttttttgagggggagagaccatttcagtagcttgctattggtttcctcatttgtcgcctatgc 8913100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 443 - 544
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  443 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattactttt 542  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||  ||||  |||||| |||  ||| |||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtcca-tacaatattaaattactttt 10763880  T
Q  543 tt 544  Q
    ||    
T  10763879 tt 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 8996030 - 8996092
Alignment:
Q  77 acacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagcctt 139  Q
    ||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||| ||||    
T  8996030 acacacaactgtggcactcaaaaacaaatgaaagaacacaaagatgaaagatataataacctt 8996092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 503
Target Start/End: Complemental strand, 6471813 - 6471749
Alignment:
Q  438 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgat 6471749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 503
Target Start/End: Original strand, 35701893 - 35701956
Alignment:
Q  440 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| |||||||||||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgat 35701956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 572
Target Start/End: Original strand, 8996343 - 8996426
Alignment:
Q  489 agtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagagaccatttcaatagcttg 572  Q
    |||| ||||| |||||||||||||||||   |||||  ||||||||||||||||||||| |  ||||   ||||||||||||||    
T  8996343 agttcaatatatgattagtggcccaatgaatcacaatggtattaaattacttttttgagagtcagaggttatttcaatagcttg 8996426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 474
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  439 tacctttctcggccttttggctaagatcaagtgtag 474  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 580
Target Start/End: Original strand, 17275862 - 17275974
Alignment:
Q  467 aagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagagaccatttcaat 566  Q
    |||||||||||  ||||||||||||| ||| ||| ||  |||| |||||||  ||||  | |||| |||||| ||||||||||||||||| || ||  ||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacga-tattgaattacatttttgagggggagagatcactttgat 17275960  T
Q  567 agcttgctattggg 580  Q
    |||||| |||||||    
T  17275961 agcttgttattggg 17275974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 5e-67; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 361 - 601
Target Start/End: Complemental strand, 3461325 - 3461085
Alignment:
Q  361 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 459  Q
    |||||||||||| ||||  | ||||||||||||| ||||| || ||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||    
T  3461325 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctctttcaattcatacctttctcggccttttggc 3461226  T
Q  460 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagagacca 559  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||| | ||||||| ||| ||  ||||||||||||||||| |||||||||  |||    
T  3461225 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcac-acgatattaaattacttttttaagggggagaagcca 3461127  T
Q  560 tttcaatagcttgctattgggtttctcaagcgtcgcctatgc 601  Q
    ||||||||||||||||||||||||||| || |||| ||||||    
T  3461126 tttcaatagcttgctattgggtttctcgagtgtcgtctatgc 3461085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 361 - 600
Target Start/End: Complemental strand, 11652575 - 11652336
Alignment:
Q  361 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 459  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| ||||||||||| |||| |   ||||||| |||||||||||||||||||||||||||    
T  11652575 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggc 11652476  T
Q  460 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagagacca 559  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||| ||  |||||||||| ||||||||||||||||  |||    
T  11652475 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcac-acgatattaaattatttttttgagggggagaagcca 11652377  T
Q  560 tttcaatagcttgctattgggtttctcaagcgtcgcctatg 600  Q
     | |||||||||||||||||| ||||  || ||||||||||    
T  11652376 ctccaatagcttgctattgggcttcttgagtgtcgcctatg 11652336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 427 - 587
Target Start/End: Complemental strand, 50077315 - 50077156
Alignment:
Q  427 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||  ||||  |    
T  50077315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatga 50077216  T
Q  527 gtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctca 587  Q
     |||||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||    
T  50077215 -tattaaattacttttttgagggggagaagccacttcaatagcttgctattgggcttctca 50077156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 428 - 554
Target Start/End: Complemental strand, 49106644 - 49106519
Alignment:
Q  428 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacag 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||      
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcac-acga 49106546  T
Q  528 tattaaattacttttttgagggggaga 554  Q
    |||||||||||||||||||||||||||    
T  49106545 tattaaattacttttttgagggggaga 49106519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 429 - 579
Target Start/End: Complemental strand, 49108747 - 49108598
Alignment:
Q  429 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| | ||||||| ||| ||  |    
T  49108747 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcac-acgat 49108649  T
Q  529 attaaattacttttttgagggggagagaccatttcaatagcttgctattgg 579  Q
    ||||||||||||||||||||||||||   |||  || ||||||||||||||    
T  49108648 attaaattacttttttgagggggagaagtcatcacagtagcttgctattgg 49108598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 437 - 555
Target Start/End: Complemental strand, 26998846 - 26998729
Alignment:
Q  437 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatt 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  |||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaatt 26998748  T
Q  537 acttttttgagggggagag 555  Q
    |||||||| |||| |||||    
T  26998747 actttttttagggagagag 26998729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 437 - 543
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  437 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatt 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  |||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaatt 26984675  T
Q  537 acttttt 543  Q
    |||||||    
T  26984674 acttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 601
Target Start/End: Original strand, 21503706 - 21503842
Alignment:
Q  464 atcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagagaccatttc 563  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||| |||| || ||| ||  |||||||||| ||||||||||||||||   |||  |    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcac-acgatattaaattatttttttgagggggagaagtcatcac 21503804  T
Q  564 aatagcttgctattgggtttctcaagcgtcgcctatgc 601  Q
    |||||||||||||||   |||||||| ||||| |||||    
T  21503805 aatagcttgctattgaacttctcaagtgtcgcttatgc 21503842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 437 - 498
Target Start/End: Original strand, 48205832 - 48205893
Alignment:
Q  437 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 498  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatat 48205893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  443 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 496  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 438 - 503
Target Start/End: Complemental strand, 41013651 - 41013586
Alignment:
Q  438 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| ||||||||| ||||    
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgat 41013586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  443 tttctcggccttttggctaagatcaagtgtagtatctgtt 482  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  441 cctttctcggccttttggctaagatcaagtgtagtat 477  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 361 - 600
Target Start/End: Complemental strand, 41841335 - 41841096
Alignment:
Q  361 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 459  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| |||||||| || |||| |   |||||||||||||||||||||||||||||||||||    
T  41841335 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggc 41841236  T
Q  460 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagagacca 559  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||| ||| ||  ||||||||||||||||||| |||||||  |||    
T  41841235 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcac-acgatattaaattacttttttgatggggagaagcca 41841137  T
Q  560 tttcaatagcttgctattgggtttctcaagcgtcgcctatg 600  Q
       |||||||||||||||||| ||||| || ||||||||||    
T  41841136 ccccaatagcttgctattgggcttctcgagtgtcgcctatg 41841096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 436 - 600
Target Start/End: Original strand, 40054312 - 40054475
Alignment:
Q  436 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||  ||  ||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtca-tacgatattaaat 40054410  T
Q  536 tacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatg 600  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| |||| ||| ||||| ||||    
T  40054411 tacttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcgcttatg 40054475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 430 - 578
Target Start/End: Original strand, 44878977 - 44879124
Alignment:
Q  430 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagta 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||| ||||  | ||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatga-ta 44879075  T
Q  530 ttaaattacttttttgagggggagagaccatttcaatagcttgctattg 578  Q
    |||||||||||||||||||||||||   |||  ||||||||||||||||    
T  44879076 ttaaattacttttttgagggggagaagtcatcacaatagcttgctattg 44879124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 430 - 578
Target Start/End: Complemental strand, 44880944 - 44880797
Alignment:
Q  430 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagta 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||| ||||  | ||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatga-ta 44880846  T
Q  530 ttaaattacttttttgagggggagagaccatttcaatagcttgctattg 578  Q
    |||||||||||||||||||||||||   |||  ||||||||||||||||    
T  44880845 ttaaattacttttttgagggggagaagtcatcacaatagcttgctattg 44880797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 433 - 575
Target Start/End: Complemental strand, 10944509 - 10944368
Alignment:
Q  433 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 532  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| | |||||  ||| ||  |||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcac-acgatatta 10944411  T
Q  533 aattacttttttgagggggagagaccatttcaatagcttgcta 575  Q
    |||||||||||||| |||||||  |||||| | ||||||||||    
T  10944410 aattacttttttgatggggagaagccattttagtagcttgcta 10944368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 361 - 503
Target Start/End: Complemental strand, 42555266 - 42555123
Alignment:
Q  361 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 459  Q
    |||||||||||| | ||| | ||||||||||||| |||||||||||||||||||  |||  ||  || |||||||||||||||||||| |  ||||||||    
T  42555266 agtcccacatcgatagtttaagaaagcaagtgagtggatgtgatatataaaacctgaaggtagctcaactttcaactcatacctttcttgatcttttggc 42555167  T
Q  460 taagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||||||||||| || ||||||| ||||||||||||||||||||    
T  42555166 taagatcaagtgcagaatctgtttttatcagtttaatatttgat 42555123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 438 - 580
Target Start/End: Original strand, 37679757 - 37679898
Alignment:
Q  438 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatta 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| ||||   | |||||||||     
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttga-tattaaattt 37679855  T
Q  538 cttttttgagggggagagaccatttcaatagcttgctattggg 580  Q
     ||| ||||||||||||| |||   |  |||||||||||||||    
T  37679856 atttattgagggggagaggccaccacggtagcttgctattggg 37679898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 436 - 589
Target Start/End: Original strand, 37682057 - 37682209
Alignment:
Q  436 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 535  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||||  | ||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacga-tattaaat 37682155  T
Q  536 tacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaag 589  Q
    |  |||||| |||  ||||| |||    |||||||||||||| ||| |||||||    
T  37682156 ttgtttttttaggatgagagtccaccaaaatagcttgctattaggtctctcaag 37682209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 361 - 503
Target Start/End: Complemental strand, 42221027 - 42220886
Alignment:
Q  361 agtcccacatcggttgttcatgaaagcaagtgagggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggct 460  Q
    |||||||||||| | ||||  ||||| |||||  |||| ||| |||||||| || | ||||| | | |||||||||||||| ||| |||| |||||||||    
T  42221027 agtcccacatcgctagttctagaaagtaagtggtggatatgagatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggct 42220928  T
Q  461 aagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||    
T  42220927 aagatcaagtgtagtatct-ttcttattagtttaatatctgat 42220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 360 - 503
Target Start/End: Original strand, 42091944 - 42092087
Alignment:
Q  360 aagtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttgg 458  Q
    ||||||||||||||| ||||| |||||||| |||| |||  ||| ||||||||||| |||| |   ||||||| |||||||||||||||  ||||||||     
T  42091944 aagtcccacatcggtagttcaagaaagcaactgagtggacctgagatataaaaccagaagcaaactcatctttaaactcatacctttctttgccttttg- 42092042  T
Q  459 ctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||| || ||||||| ||| |||||||||||||||||||| ||||    
T  42092043 ctaaaattaagtgtaatatttgttcttatcagtttaatatctgat 42092087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 429 - 479
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  429 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 479  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 453 - 503
Target Start/End: Original strand, 44582870 - 44582920
Alignment:
Q  453 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 44582920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 427 - 587
Target Start/End: Complemental strand, 10796006 - 10795847
Alignment:
Q  427 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||||| ||| ||     
T  10796006 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcac-acg 10795908  T
Q  527 gtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctca 587  Q
     |||||||||||||||||||||||||||  ||| ||||||||||||||||| || ||||||    
T  10795907 atattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctca 10795847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 427 - 587
Target Start/End: Complemental strand, 10791768 - 10791609
Alignment:
Q  427 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||| ||||  |    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatga 10791669  T
Q  527 gtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctca 587  Q
     |||||||||||||||||||||||||||  ||| ||||||||||||||||| || ||||||    
T  10791668 -tattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctca 10791609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 436 - 594
Target Start/End: Original strand, 30521242 - 30521399
Alignment:
Q  436 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 535  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||  |||| |||  |   ||| ||  |||| |||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcac-acgatattcaat 30521340  T
Q  536 tacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcg 594  Q
    |  ||||||||||||||||| ||| | | ||||||||||||||||| ||||||| ||||    
T  30521341 ttattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcg 30521399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 438 - 503
Target Start/End: Original strand, 8875691 - 8875756
Alignment:
Q  438 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgat 8875756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 543
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  443 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattactttt 542  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||||||||||||| | ||  ||||| |||||   ||||| | |||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaa-aatattaaattactttt 21216130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 361 - 554
Target Start/End: Complemental strand, 1716634 - 1716441
Alignment:
Q  361 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 459  Q
    |||||||||||| | ||||| ||||||||||||| |||||||| ||||||||  | |||||||  ||||||| |||||||||||||||||||||||||||    
T  1716634 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 1716536  T
Q  460 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg-cccaatgggccacaacagtattaaattacttttttgagggggaga 554  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||| || |||||| ||| ||  ||||||||||||||||| |||||||||    
T  1716535 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcac-acgatattaaattacttttttaagggggaga 1716441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 395 - 586
Target Start/End: Original strand, 3643599 - 3643789
Alignment:
Q  395 ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 494  Q
    |||||||  |||||||| || ||||||||    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643599 ggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 3643698  T
Q  495 atatttgattagtggcccaatgggccacaacagtattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctc 586  Q
    |||| ||||  |||||||| |||| ||| ||  ||||||||||||||||| ||||||||| || ||  ||||||||||||||||||||||||    
T  3643699 atatctgatatgtggcccattgggtcac-acgatattaaattacttttttaagggggagaaactatcacaatagcttgctattgggtttctc 3643789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 429 - 555
Target Start/End: Original strand, 7524961 - 7525086
Alignment:
Q  429 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 528  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||  ||| ||  |    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcac-acgat 7525059  T
Q  529 attaaattacttttttgagggggagag 555  Q
    |||||||||||||||||||||||||||    
T  7525060 attaaattacttttttgagggggagag 7525086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 440 - 555
Target Start/End: Original strand, 4103249 - 4103363
Alignment:
Q  440 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattact 539  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| | |||| ||  ||||||||| ||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccac-acgatattaaattgct 4103347  T
Q  540 tttttgagggggagag 555  Q
    ||||| |||| |||||    
T  4103348 ttttttagggagagag 4103363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 546
Target Start/End: Original strand, 16037861 - 16037966
Alignment:
Q  438 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatta 537  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||||||| |||||| | |||||| || |||  ||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttga-tagtggtctaatgggtca-aacgatattaaatta 16037957  T
Q  538 cttttttga 546  Q
    |||||||||    
T  16037958 cttttttga 16037966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 3643056 - 3643164
Alignment:
Q  21 ctactacatcacagtttcaattcttaagagtattttggcaaataattctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaa 120  Q
    ||||||||||| || || ||||||||||||||| | |||| |||||||||| ||    |||||||||||| |||| ||||  ||| ||||||| |||| |    
T  3643056 ctactacatcagagattgaattcttaagagtatgtcggcatataattctaagag----acacaacagtgggactc-aaaaggaatgaatgaacccaaaga 3643150  T
Q  121 tgaaagatataata 134  Q
    |||| |||||||||    
T  3643151 tgaatgatataata 3643164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 503
Target Start/End: Complemental strand, 19261216 - 19261156
Alignment:
Q  443 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 503  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||| ||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgat 19261156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 587
Target Start/End: Original strand, 27134511 - 27134661
Alignment:
Q  436 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 535  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  ||||||||| ||||  |||| | |||| | || |||  ||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtca-aacgatattaaat 27134609  T
Q  536 tacttttttgagggggagagaccatttcaatagcttgctattgggtttctca 587  Q
    |||||||||||||||||||   ||  ||||||| ||||| ||||| ||||||    
T  27134610 tacttttttgagggggagaagacacctcaatagtttgctgttgggcttctca 27134661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 555
Target Start/End: Original strand, 8128149 - 8128260
Alignment:
Q  442 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttt 541  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | |||||||||| ||||  |||| ||||| || ||| ||| |||||||||  |||    
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaat-ggtcac-acaatattaaatttattt 8128246  T
Q  542 tttgagggggagag 555  Q
     |||||||||||||    
T  8128247 cttgagggggagag 8128260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 484
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  438 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 484  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 597
Target Start/End: Original strand, 5487 - 5556
Alignment:
Q  528 tattaaattacttttttgagggggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcct 597  Q
    |||||||||  |||||||||| |||||| |||   ||||||||||||||||||| ||||||| |||||||    
T  5487 tattaaatttattttttgaggtggagagtccaccacaatagcttgctattgggtctctcaagtgtcgcct 5556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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