View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12945_low_3 (Length: 425)

Name: NF12945_low_3
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12945_low_3
NF12945_low_3
[»] chr6 (6 HSPs)
chr6 (17-410)||(11121113-11121506)
chr6 (277-377)||(1122202-1122302)
chr6 (274-363)||(18898897-18898986)
chr6 (321-363)||(19430326-19430368)
chr6 (321-363)||(22514533-22514575)
chr6 (283-356)||(22460488-22460561)
[»] chr7 (7 HSPs)
chr7 (17-399)||(21292003-21292397)
chr7 (274-388)||(21949747-21949860)
chr7 (274-363)||(9174884-9174973)
chr7 (274-363)||(6617022-6617111)
chr7 (274-363)||(46809031-46809120)
chr7 (274-363)||(34638492-34638581)
chr7 (274-363)||(42053618-42053707)
[»] chr4 (15 HSPs)
chr4 (60-388)||(29688924-29689262)
chr4 (61-270)||(37011223-37011431)
chr4 (60-236)||(29689319-29689493)
chr4 (274-388)||(36316211-36316324)
chr4 (274-388)||(36330420-36330533)
chr4 (274-355)||(27020261-27020342)
chr4 (274-363)||(34806279-34806368)
chr4 (274-363)||(39295911-39296000)
chr4 (283-409)||(33287453-33287579)
chr4 (274-363)||(5948179-5948268)
chr4 (289-357)||(53095208-53095276)
chr4 (283-370)||(37011111-37011198)
chr4 (302-377)||(1206544-1206618)
chr4 (290-359)||(34446702-34446771)
chr4 (289-368)||(32107443-32107525)
[»] chr8 (12 HSPs)
chr8 (17-275)||(3730159-3730416)
chr8 (105-377)||(3730247-3730513)
chr8 (274-371)||(18464711-18464808)
chr8 (274-395)||(31441761-31441882)
chr8 (66-208)||(11756441-11756579)
chr8 (274-363)||(12498713-12498802)
chr8 (274-363)||(18381357-18381446)
chr8 (274-363)||(39617899-39617988)
chr8 (301-356)||(22935494-22935548)
chr8 (274-363)||(6420900-6420989)
chr8 (301-386)||(11958635-11958720)
chr8 (311-362)||(15988073-15988124)
[»] chr2 (8 HSPs)
chr2 (85-225)||(12111633-12111773)
chr2 (274-357)||(4647944-4648027)
chr2 (274-375)||(19622557-19622658)
chr2 (301-363)||(30960858-30960919)
chr2 (302-399)||(9893872-9893967)
chr2 (301-363)||(7647590-7647651)
chr2 (292-362)||(17419091-17419161)
chr2 (274-363)||(40267805-40267894)
[»] chr5 (8 HSPs)
chr5 (274-363)||(40835033-40835122)
chr5 (274-357)||(1594553-1594636)
chr5 (274-388)||(39004850-39004963)
chr5 (274-363)||(5808339-5808428)
chr5 (274-363)||(16484938-16485027)
chr5 (274-363)||(39560908-39560997)
chr5 (310-363)||(641016-641069)
chr5 (274-363)||(16482489-16482578)
[»] chr3 (13 HSPs)
chr3 (274-363)||(3335962-3336051)
chr3 (289-362)||(25899153-25899226)
chr3 (274-363)||(33951682-33951771)
chr3 (283-363)||(47330053-47330133)
chr3 (274-363)||(22402398-22402487)
chr3 (274-363)||(37969168-37969257)
chr3 (286-363)||(4062400-4062477)
chr3 (266-363)||(4545679-4545776)
chr3 (274-363)||(28414066-28414155)
chr3 (302-377)||(46028310-46028384)
chr3 (289-351)||(23687689-23687750)
chr3 (289-351)||(24059926-24059987)
chr3 (302-380)||(587298-587374)
[»] chr1 (14 HSPs)
chr1 (274-363)||(2843948-2844037)
chr1 (274-363)||(38981055-38981144)
chr1 (316-409)||(36085755-36085848)
chr1 (274-363)||(2027818-2027907)
chr1 (274-363)||(18414527-18414616)
chr1 (274-363)||(28641572-28641661)
chr1 (274-363)||(32519751-32519840)
chr1 (274-363)||(45541457-45541546)
chr1 (274-363)||(49008163-49008252)
chr1 (302-377)||(32829231-32829305)
chr1 (274-363)||(8110684-8110773)
chr1 (283-363)||(24779852-24779932)
chr1 (302-377)||(5965116-5965190)
chr1 (302-374)||(15853336-15853407)
[»] scaffold0009 (1 HSPs)
scaffold0009 (274-363)||(194654-194743)
[»] scaffold0256 (1 HSPs)
scaffold0256 (274-363)||(4038-4127)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 11121113 - 11121506
Alignment:
Q  17 ggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggct 116  Q
    ||||||||| ||||||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11121113 ggttggtgttattcaaatcagatctgcactttcgagttctaagcgtgtgggttctgtcagatggcagctccatttgacaaagtattcagattgataggct 11121212  T
Q  117 agaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaag 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11121213 agaaacggtcatacaaacttgttgtcttgtgtctcaatgagtggttcgcgggtgtattcgctaccgcgttggcggtcaaattcattgccattggtaaaag 11121312  T
Q  217 tttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccagaatttgctattgatcatcgcagtaaacggttggtgcatgtgga 316  Q
     |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11121313 gttggagttcataattgtgcctaagttgtgcttgcatgatggcttgttgtgggccagaatttgctattgatcatcgcagtaaacggttggtgcgtgtgga 11121412  T
Q  317 ttcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgttcactgacatga 410  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  11121413 ttcgttaattaccgtgttggcggtcgaatccactccccactttcaagcatctgtctgtggttatgtatcccagtcatcctgttcactaacatga 11121506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 377
Target Start/End: Original strand, 1122202 - 1122302
Alignment:
Q  277 ttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtgg 376  Q
    |||||| ||||||| | | ||||| |||| ||| |||||||||  ||||||||||||||||||| |||||||||||||||| ||||| |||| | |||||    
T  1122202 ttgctagtgatcatagtattaaaccgttgttgcgtgtggattcgctaattaccgtgttggcggtcgaatccactccccactctcaagaatctatttgtgg 1122301  T
Q  377 t 377  Q
    |    
T  1122302 t 1122302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 18898897 - 18898986
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18898897 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18898986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 19430368 - 19430326
Alignment:
Q  321 ttaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  19430368 ttaattaccgtgttggcggttgaatctactccccactctcaag 19430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 22514575 - 22514533
Alignment:
Q  321 ttaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  22514575 ttaattaccgtgttggcggttgaatctactccccactctcaag 22514533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 22460561 - 22460488
Alignment:
Q  283 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccac 356  Q
    ||||| |||||| |||| ||||||||  ||| |||||  || |||||||||||||||||||||| |||||||||    
T  22460561 ttgatgatcgcattaaatggttggtgtgtgttgattcgctatttaccgtgttggcggttgaatctactccccac 22460488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 21292003 - 21292397
Alignment:
Q  17 ggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggct 116  Q
    |||||||||||||  ||||||||  ||||||||||||||  |   |||||||| |||| |||||| ||||||||||||| || || || |||||| |||     
T  21292003 ggttggtgtgatttgaatcagttatgcactttcgggttccgagcatgtgggttatgtcggatggccgctccatttgacggaggatccaaattgatgggcc 21292102  T
Q  117 agaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaag 216  Q
    | |||| ||| |||||||||| |||||| ||||||| ||||||||||||||||| | ||||| ||||||| | ||||  ||||||| |||||||||||||    
T  21292103 aaaaatagtcgtacaaacttgatgtcttctgtctcagtgagtggttggtgggtggactcgctgccgtgttcgtggtcggattcatttccattggtaaaag 21292202  T
Q  217 tttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccag------------aatttgctattgatcatcgcagtaaacggtt 304  Q
     |||||||||| |||| ||||||| ||||||||| ||||| ||||| ||||||| ||            |||||| | ||||||||||||||||||||||    
T  21292203 gttggagttcagacttatgcctagtttgtgcttgtatgatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatcgcagtaaacggtt 21292302  T
Q  305 ggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgtt 399  Q
    ||||| |||  |||| ||||||||||||||||||||  | |||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||    
T  21292303 ggtgcgtgttaattcgttaattaccgtgttggcggtcaagtccactccccacttgcaagcatctgtttgtggttatgtatccaagtcatcctgtt 21292397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 21949747 - 21949860
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 373  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||| ||||||||| |||||||||| ||||| || ||| ||    
T  21949747 aatttgatgttgatcatagcagtaaacagttcgtgcgtgtggattttttaattaccgtgttggtggttgaatctactccccactctcaagaatatgtatg 21949846  T
Q  374 tggttatgtatccca 388  Q
    | ||| |||||||||    
T  21949847 t-gttttgtatccca 21949860  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 9174884 - 9174973
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  ||||||||| |||||||||||||||| |||||||||| |||||    
T  9174884 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccatgttggcggttgaatcaactccccactctcaag 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 6617111 - 6617022
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  6617111 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 6617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 46809120 - 46809031
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  46809120 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 46809031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 34638492 - 34638581
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  34638492 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 34638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 42053707 - 42053618
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  42053707 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 42053618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 60 - 388
Target Start/End: Complemental strand, 29689262 - 29688924
Alignment:
Q  60 tgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtg 159  Q
    |||||||||| |||| |||||| |||| |||||||| || ||||| |||||||| ||| |||||  | |||||||||||||||| |||| ||| ||||||    
T  29689262 tgtgtgggttatgtcggatggcggctctatttgacggaggattcaaattgatagactaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtg 29689163  T
Q  160 gttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggc 259  Q
    |||||| |||| || |||||||||||||||| ||   |||||||||||||||  ||| |||||| ||| |||||||||||||||||||| | ||||   |    
T  29689162 gttggtaggtggatccgctaccgtgttggcgatc-ggttcattgccattggt-gaaggttggagctcagacttgtgcctaggttgtgctagtatgaccac 29689065  T
Q  260 ttgttgtgggccag------------aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatcc 347  Q
     ||||||||||  |            |||||| | || |||||||||||||||| |||||||  ||||||||  ||||||||||||||||||| ||| ||    
T  29689064 atgttgtgggctggaaatgactgattaatttgttgttaatcatcgcagtaaacgattggtgcgcgtggattcgctaattaccgtgttggcggtcgaaccc 29688965  T
Q  348 actccccactttcaagcatctgtctgtggttatgtatccca 388  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  29688964 actccccactttcaagcatttgtccgtggttatgtatccca 29688924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 61 - 270
Target Start/End: Complemental strand, 37011431 - 37011223
Alignment:
Q  61 gtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtgg 160  Q
    ||||||||| |||  ||||| |||||||||||| | || ||||||||||||||||||||||||||| |||||||||| ||| | |||||| | |||||||    
T  37011431 gtgtgggttttgttggatggtagctccatttgatggaggattcagattgataggctagaaatggtcgtacaaacttgatgtatggtgtcttagtgagtgg 37011332  T
Q  161 ttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggct 260  Q
    |||||| ||| |||||||| |||||||||||||  |||||||||||||||| |||| ||||| || | ||||||||||| ||||||||||  |||| |||    
T  37011331 ttggtgagtggattcgctatcgtgttggcggtcggattcattgccattggt-aaaggttggattttagacttgtgcctatgttgtgcttgtgtgatcgct 37011233  T
Q  261 tgttgtgggc 270  Q
    | ||||||||    
T  37011232 ttttgtgggc 37011223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 29689493 - 29689319
Alignment:
Q  60 tgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtg 159  Q
    |||||||||| |||| |||||| |||| |||||||| || ||||| |||||||| ||| |||||  | |||||||||||||||| |||| ||| ||||||    
T  29689493 tgtgtgggttatgtcggatggcggctctatttgacggaggattcaaattgatagactaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtg 29689394  T
Q  160 gttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgc 236  Q
    |||||| |||| ||||||||||||||||||||||   |||||||||||||||  ||| |||||| ||| ||||||||    
T  29689393 gttggtaggtggattcgctaccgtgttggcggtc-ggttcattgccattggt-gaaggttggagctcagacttgtgc 29689319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 36316211 - 36316324
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 373  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| |||||||||| ||||| || ||| ||    
T  36316211 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccccactctcaagaatatgtatg 36316310  T
Q  374 tggttatgtatccca 388  Q
    | ||| |||||||||    
T  36316311 t-gttttgtatccca 36316324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 36330420 - 36330533
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 373  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| |||||||||| ||||| || ||| ||    
T  36330420 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccccactctcaagaatatgtatg 36330519  T
Q  374 tggttatgtatccca 388  Q
    | ||| |||||||||    
T  36330520 t-gttttgtatccca 36330533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 27020261 - 27020342
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactcccca 355  Q
    |||||| | |||||||| ||||||||| ||| ||||||||| |||  |||||||||||||||||||||||||| ||||||||    
T  27020261 aatttgatgttgatcatagcagtaaacagttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactcccca 27020342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 34806368 - 34806279
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  ||||||||||||||||||||||||||  ||||||||| |||||    
T  34806368 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctgctccccactctcaag 34806279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 39296000 - 39295911
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  ||||||||||||||||| |||||||| |||||||||| |||||    
T  39296000 aatttgatgttgatcatagcagtaaacagttagtgtgtgtggatttgttaattaccgtgttggctgttgaatctactccccactctcaag 39295911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 409
Target Start/End: Original strand, 33287453 - 33287579
Alignment:
Q  283 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgt 382  Q
    ||||||| ||||||||||   ||||||| |||||||  ||| ||||||||||||||||  |||||| |||||| |||||||||| |||  || |||||      
T  33287453 ttgatcaccgcagtaaacaagtggtgcacgtggatttgttatttaccgtgttggcggtcaaatccagtccccaatttcaagcatttgtgcgtcgttatta 33287552  T
Q  383 atcccaatcatcctgttcactgacatg 409  Q
    ||| || |||||||||| | |||||||    
T  33287553 atctcagtcatcctgttgattgacatg 33287579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 5948268 - 5948179
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  5948268 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 5948179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 53095208 - 53095276
Alignment:
Q  289 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 357  Q
    ||||||||||| ||||||||||||| ||||| | | |||||||||||| ||||| |||||||| |||||    
T  53095208 atcgcagtaaatggttggtgcatgtagattcgtcatttaccgtgttggtggttggatccactctccact 53095276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 370
Target Start/End: Complemental strand, 37011198 - 37011111
Alignment:
Q  283 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgt 370  Q
    |||||||||| ||||||| ||||||||| |||||||   ||||||  |||||  ||||  ||| ||||||||||||||||||||||||    
T  37011198 ttgatcatcgtagtaaacagttggtgcaggtggatttgctaattattgtgttaacggtcaaattcactccccactttcaagcatctgt 37011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 1206544 - 1206618
Alignment:
Q  302 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 377  Q
    ||||||||| ||| |||| |||||||||||||||||||| |||| ||| ||||| |||||| ||| |||| |||||    
T  1206544 gttggtgcacgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaaacatttgtccgtggt 1206618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 34446771 - 34446702
Alignment:
Q  290 tcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccacttt 359  Q
    ||||||||||| |||||||   |||||||| ||| |||||||||||||||| | ||||||| ||| ||||    
T  34446771 tcgcagtaaacagttggtgatcgtggattctttagttaccgtgttggcggtcggatccacttcccgcttt 34446702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 368
Target Start/End: Original strand, 32107443 - 32107525
Alignment:
Q  289 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcg---gttgaatccactccccactttcaagcatct 368  Q
    |||||| |||| |||||||||  |||||||  ||| ||||||||||||||    ||| |||||||||||||||||||| ||||    
T  32107443 atcgcaataaatggttggtgcgagtggatttgttatttaccgtgttggcgattattggatccactccccactttcaagaatct 32107525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 3730159 - 3730416
Alignment:
Q  17 ggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggct 116  Q
    ||||||||||| || | |||| ||  |||||||| ||||  |  ||||| ||| ||||| ||| ||| || |||||| | || |||  |||||||| |||    
T  3730159 ggttggtgtgactcgactcagatcttcactttcgtgttccgagcgtgtgagttatgtcaaatgacagttctatttgagggaggattttgattgatatgct 3730258  T
Q  117 agaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaag 216  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||| ||||||  |||||||||||||||| ||||    
T  3730259 agaaattgtcgtacaaacttgttgtcttgtgtctcagttagtggttggtgggtagattcgataccgtgtttgcggtcggattcattgccattggt-aaag 3730357  T
Q  217 tttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccagaa 275  Q
     ||| |||||  ||||| |||||||| ||||||| ||||| ||||||||| ||||||||    
T  3730358 gttgtagttcggacttgagcctaggtagtgcttgtatgatcgcttgttgttggccagaa 3730416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 105 - 377
Target Start/End: Original strand, 3730247 - 3730513
Alignment:
Q  105 gattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattgc 204  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||| ||||||  |||||||||    
T  3730247 gattgatatgctagaaattgtcgtacaaacttgttgtcttgtgtctcagttagtggttggtgggtagattcgataccgtgtttgcggtcggattcattgc 3730346  T
Q  205 cattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccagaatttgct-attgatcatcgcagtaaacggt 303  Q
    |||||||||| ||| | |||||  ||||| |||||||| ||||||| ||||| ||||||||| |||||||| | ||| ||| || ||     | | ||      
T  3730347 cattggtaaaggtt-gtagttcggacttgagcctaggtagtgcttgtatgatcgcttgttgttggccagaaatggctgattaatgatga---tcatcg-- 3730440  T
Q  304 tggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 377  Q
    | ||||  |||||||| ||| ||||| |||||||| |  ||||||||||||||||||||| || ||||||||||    
T  3730441 tagtgcgcgtggattcgtta-ttaccatgttggcgttcaaatccactccccactttcaagaatttgtctgtggt 3730513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 18464711 - 18464808
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtc 371  Q
    |||||||  |||||||||||||||||| | ||||||  |||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  18464711 aatttgccgttgatcatcgcagtaaacaggtggtgcgcgtggattcgttatttaccgtgtcggcggtcgaatccactccccactttcaagcatctgtc 18464808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 31441882 - 31441761
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 373  Q
    |||||||| ||||| ||||||||||||| | ||||| ||||||||  ||||| || ||||||||||||||||||||||||||||  |||| |||||||||    
T  31441882 aatttgctgttgatgatcgcagtaaacgataggtgcgtgtggatttgttaatgactgtgttggcggttgaatccactccccactagcaagaatctgtctg 31441783  T
Q  374 tggttatgtatcccaatcatcc 395  Q
    |||||  |||||| | ||||||    
T  31441782 tggtttcgtatcctagtcatcc 31441761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 11756579 - 11756441
Alignment:
Q  66 ggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggt 165  Q
    ||||||||| | |||||||| || |  ||||||  || ||||| ||||||||||||||| | || ||||||||||| ||    |||| ||||||||||||    
T  11756579 ggttctgtcggttggcagcttcagtcaacgaaggtttaagattaataggctagaaatggccgtataaacttgttgtttt----ctcagtgagtggttggt 11756484  T
Q  166 gggtgtattcgctaccgtgttggcggtcaaattcattgccatt 208  Q
     |||| || |||||||||||||||||||| | | |||||||||    
T  11756483 tggtggatccgctaccgtgttggcggtcagactgattgccatt 11756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 12498713 - 12498802
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  12498713 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactcctcactctcaag 12498802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 18381357 - 18381446
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18381357 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18381446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 39617899 - 39617988
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  39617899 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 39617988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 22935494 - 22935548
Alignment:
Q  301 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccac 356  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||    
T  22935494 ggttggtg-atgtggattcgttaactaccgtgttggcggtcgaatccactccccac 22935548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 6420989 - 6420900
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| |||  ||||| |||||    
T  6420989 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctactttccactctcaag 6420900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 11958635 - 11958720
Alignment:
Q  301 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcc 386  Q
    ||||||||| ||||||||||||| ||||| || | ||||| | ||||||||| |||| ||||| || ||| ||||||| |||||||    
T  11958635 ggttggtgcgtgtggattcattagttaccatggtagcggtcggatccactccacactctcaagaatttgtttgtggttttgtatcc 11958720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 15988124 - 15988073
Alignment:
Q  311 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 362  Q
    |||||||||  ||||||||||||||||||| |||| ||||||||||| ||||    
T  15988124 tgtggattctctaattaccgtgttggcggtcgaattcactccccactctcaa 15988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 12111773 - 12111633
Alignment:
Q  85 tccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtg 184  Q
    ||||||||||| || | | ||||||||||||||||||||| | |  ||||||| ||| ||||||||||  ||||| ||||| |||| ||||||||| |||    
T  12111773 tccatttgacggaggagtaagattgataggctagaaatggccgtttaaacttgatgttttgtgtctcagcgagtgattggttggtggattcgctacggtg 12111674  T
Q  185 ttggcggtcaaattcattgccattggtaaaagtttggagtt 225  Q
    ||||| |||| ||| ||| ||||| ||||||| ||||||||    
T  12111673 ttggcagtcagatttattaccatttgtaaaaggttggagtt 12111633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 357
Target Start/End: Original strand, 4647944 - 4648027
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 357  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  4647944 aatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccccact 4648027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 375
Target Start/End: Complemental strand, 19622658 - 19622557
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 373  Q
    |||||||||| ||||||||||| ||  ||||||||  ||||||||| |||||||||||||||| |||  ||||||||||||||| ||||| |||||| ||    
T  19622658 aatttgctatagatcatcgcagcaactggttggtgtgtgtggattcgttaattaccgtgttggtggtcaaatccactccccactctcaagaatctgtttg 19622559  T
Q  374 tg 375  Q
    ||    
T  19622558 tg 19622557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 30960919 - 30960858
Alignment:
Q  301 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  30960919 ggttggtg-atgtggattcgttaattaccgtgttggcggtcgaatccgctccccactctcaag 30960858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 9893872 - 9893967
Alignment:
Q  302 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgtt 399  Q
    ||||||||  ||| |||| ||||||| ||||| |||| | |||||||| |||||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  9893872 gttggtgcgcgtgaattcgttaattatcgtgt-ggcgatcgaatccac-ccccactttcaaacatttgtctgtggttatctatcccagtcatcctgtt 9893967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 7647590 - 7647651
Alignment:
Q  301 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||| ||||||||||| |||||    
T  7647590 ggttggtg-atgtggattcgttaactaccgtgttggcggtcgaatgcactccccactctcaag 7647651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 17419161 - 17419091
Alignment:
Q  292 gcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 362  Q
    ||||||||  |||||||| |||||||||  ||||||||||||||||||| |||| ||||| ||||| ||||    
T  17419161 gcagtaaattgttggtgcgtgtggattcgctaattaccgtgttggcggtcgaattcactcgccactctcaa 17419091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 40267894 - 40267805
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| |||||||||  || |||| |||| |||  ||||||||||||||||||||| |||| ||||| |||| |||||    
T  40267894 aatttgatgttgatcatagcagtaaacaattagtgcgtgtgaatttgttaattaccgtgttggcggtttaatctactcctcactctcaag 40267805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 40835122 - 40835033
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  40835122 aatttgatgttgatcatagcagtaaactgttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 40835033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 274 - 357
Target Start/End: Original strand, 1594553 - 1594636
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 357  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  1594553 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacact 1594636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 388
Target Start/End: Complemental strand, 39004963 - 39004850
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 373  Q
    |||||| | |||||||| || |||||| ||| |||| ||||||||  ||||||||||||||| |||||||||| |||||||||| ||||| || ||| ||    
T  39004963 aatttgatgttgatcatagctgtaaacagttagtgcgtgtggatttgttaattaccgtgttgacggttgaatctactccccactctcaagaatatgtatg 39004864  T
Q  374 tggttatgtatccca 388  Q
    | ||| |||||||||    
T  39004863 t-gttttgtatccca 39004850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 5808339 - 5808428
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  5808339 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 5808428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 16485027 - 16484938
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  16485027 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 16484938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 39560908 - 39560997
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| | ||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  39560908 aatttgatgttgatcatagcagtaaactgttagtgcgtatggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 39560997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 641016 - 641069
Alignment:
Q  310 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||||| |||||    
T  641016 atgtggattcgttaactaccgtgttggcggtcgaatccactccccactctcaag 641069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 16482578 - 16482489
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  16482578 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 16482489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 3335962 - 3336051
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  3335962 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 3336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 25899153 - 25899226
Alignment:
Q  289 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 362  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||    
T  25899153 atcgcactaaacggttggtgcatgtggtttcattaattaccgtgttggcggtcgaatctactctccactctcaa 25899226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 33951682 - 33951771
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  33951682 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggattttttaattaccgtgttggcggttgaatctactccccactctcaag 33951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 47330053 - 47330133
Alignment:
Q  283 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  47330053 ttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 47330133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 22402487 - 22402398
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  22402487 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 22402398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 37969257 - 37969168
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  37969257 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 37969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 4062400 - 4062477
Alignment:
Q  286 atcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    ||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  4062400 atcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 4062477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 363
Target Start/End: Original strand, 4545679 - 4545776
Alignment:
Q  266 tgggccagaatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||||||| | ||| ||||||||||||||||| |||||||   ||| |||||  || ||||| |||||||||| ||||||| |||||||| |||||    
T  4545679 tgggccagaaatggctgttgatcatcgcagtaaatggttggtatgtgttgattcgctatttaccatgttggcggtcgaatccaatccccactctcaag 4545776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 28414066 - 28414155
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||| ||||||||||||||||| ||||| |||| |||||    
T  28414066 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattactgtgttggcggttgaatctactccacactctcaag 28414155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 46028310 - 46028384
Alignment:
Q  302 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 377  Q
    |||||||| |||| |||| |||||||| ||||||||||| |||||||| ||| | |||||||||| ||||||||||    
T  46028310 gttggtgcttgtgaattcgttaattacagtgttggcggtcgaatccac-ccctattttcaagcatttgtctgtggt 46028384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 23687750 - 23687689
Alignment:
Q  289 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactc 351  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||||||||||    
T  23687750 atcgcagtaaatggttggtgcatgt-gattcatcaattactgtgttgccggtcgaatccactc 23687689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 24059987 - 24059926
Alignment:
Q  289 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactc 351  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||||||||||    
T  24059987 atcgcagtaaatggttggtgcatgt-gattcatcaattactgtgttgccggtcgaatccactc 24059926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 587374 - 587298
Alignment:
Q  302 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttat 380  Q
    ||||||||| ||||||||| |||||||||||||||| || |||| ||  ||||| ||||||||||  ||| ||||||||    
T  587374 gttggtgcacgtggattcactaattaccgtgttggccgtcgaattca--ccccattttcaagcattagtccgtggttat 587298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 2844037 - 2843948
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| ||||||||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  2844037 aatttgatgttgatcatagcagtaaactgttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactccccactctcaag 2843948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 38981055 - 38981144
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  ||||||| |||||||||||||||||| |||||||||| |||||    
T  38981055 aatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaacgtgttggcggttgaatctactccccactctcaag 38981144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 409
Target Start/End: Complemental strand, 36085848 - 36085755
Alignment:
Q  316 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgttcactgacatg 409  Q
    |||| ||| ||||||| ||| |||| |||| |||||| ||||||||||||||||||||||||||| ||||||| ||||| |||| | |||||||    
T  36085848 attcgttatttaccgtattgacggtcgaattcactccacactttcaagcatctgtctgtggttatctatcccagtcatcttgttgattgacatg 36085755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 2027907 - 2027818
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| | ||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  2027907 aatttgatgttgatcatagtagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 2027818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 18414616 - 18414527
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18414616 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 28641572 - 28641661
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  28641572 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 28641661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 32519751 - 32519840
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  32519751 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 32519840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 45541546 - 45541457
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  45541546 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 45541457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 49008252 - 49008163
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  ||||||||||| |||||||||||||| ||||| |||| |||||    
T  49008252 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtattggcggttgaatctactccacactctcaag 49008163  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 32829231 - 32829305
Alignment:
Q  302 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 377  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||    
T  32829231 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccccattttcaagcatttgtctgtggt 32829305  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 8110773 - 8110684
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||   || |||| |||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  8110773 aatttgatgttgatcatagcagtaaatatttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactccccactctcaag 8110684  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 363
Target Start/End: Complemental strand, 24779932 - 24779852
Alignment:
Q  283 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||||| | ||||||| ||| |||| | ||||||  |||||||||||||| ||||||||||| |||||||||| |||||    
T  24779932 ttgatcatagaagtaaacagttagtgcgtctggatttgttaattaccgtgttagcggttgaatctactccccactctcaag 24779852  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 5965116 - 5965190
Alignment:
Q  302 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 377  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||| ||| ||||| |||||||||| ||||||||||    
T  5965116 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaagcatttgtctgtggt 5965190  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 15853407 - 15853336
Alignment:
Q  302 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgt 374  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||||||| ||| | |||||||||| |||||||    
T  15853407 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccctattttcaagcatttgtctgt 15853336  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 194654 - 194743
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  194654 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 194743  T

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Target: scaffold0256 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 4038 - 4127
Alignment:
Q  274 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 363  Q
    |||||| | |||||||| | | ||||| ||| |||| |||| |||  ||||||||||||||||||||||||||  ||| ||||| |||||    
T  4038 aatttgatgttgatcatagaaataaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatcttctctccactctcaag 4127  T

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