View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12945_low_4 (Length: 419)
Name: NF12945_low_4
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12945_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 32704375 - 32703970
Alignment:
| Q |
14 |
catcagttgccgcatacaaagcttcagtagagctagaccgtattcaagggaaaagaagaatctggttttctggggcataccaaggtacattcctgattat |
113 |
Q |
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| T |
32704375 |
catcagttgccgcatacaaagcttcagtagagctagaccgtattcaagggaaaagaaaaatctggttttctggggcataccaaggtacattcctgattat |
32704276 |
T |
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| Q |
114 |
tctctttatttacatcaaaattcaaaagttttcataattgttgggtcacgaatggagccaaaccggagagatctcacatttggttaaaggtaaattatac |
213 |
Q |
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| T |
32704275 |
tctctttatttacatcaaaattcaaaagttttcataattgttgggtcacgaatggagccaaaccggagagatctcacatttggttaaaggtaaattatac |
32704176 |
T |
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| Q |
214 |
atgtgatctgatctaagtaaatgtttgtactttttaggttatggatttcatgaagatggattaaaggtaatcaaagcttagtctataatggaaaaagaaa |
313 |
Q |
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| T |
32704175 |
atgtgatctgatctaagtaaatgtttgtgctttttaggttatggatttcatgaagatggattaaaggtaatcaaagcttagtctgtaatggaaaaagaaa |
32704076 |
T |
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| Q |
314 |
tttggattttactaaaaatataattccagtaagagttcccttgcaaaatgtcaccaacctgttgaaacaaaacaaacaactgaagtgtaagactgaactt |
413 |
Q |
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| T |
32704075 |
tttatattttactaaaaatataattctagtaagagttcccttgcaaaatgtcaccaacctgatgaaacaaaacaaacaactgatgtgtaagactgaactt |
32703976 |
T |
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| Q |
414 |
tcaggc |
419 |
Q |
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| T |
32703975 |
tcaggc |
32703970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 16809216 - 16809262
Alignment:
| Q |
54 |
tattcaagggaaaagaagaatctggttttctggggcataccaaggta |
100 |
Q |
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| T |
16809216 |
tattcaagggaaaagaaaaatatggttttcaggggtataccaaggta |
16809262 |
T |
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