View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12945_low_5 (Length: 325)
Name: NF12945_low_5
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12945_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 51739034 - 51738845
Alignment:
| Q |
1 |
tttgaggtatttgagtctgtgtttcagatcctaaattattggtgaaagacttgtaagtaacgaccaatcattttgtcatgtctactatttcccccttttc |
100 |
Q |
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| T |
51739034 |
tttgaggtatttgagtctgtgtttcagatcctaaattattgctgaaagacttgtaagtaacgaccaatcattttgtcatgtctactatttcctcctttac |
51738935 |
T |
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| Q |
101 |
tctagctaaagctaacaaccaattgttatgtttgattaaaatattatatgagttgctaaattttaataattaactagaaaatcatttctt |
190 |
Q |
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| T |
51738934 |
tctagctaaagctaacaaccaattgttatgtttgattaaaatattatatgagttgctaaattttaataattaactagaaaatcatttctt |
51738845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 219 - 325
Target Start/End: Complemental strand, 51738819 - 51738713
Alignment:
| Q |
219 |
ctaattgcttgcgaccaccgaccagtgcatgcaccaagtcccttacaaattgtggaaattgctagtacnnnnnnnaagtacacaaaagataacataaaaa |
318 |
Q |
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| T |
51738819 |
ctaattgcttgcgaccaccgaccagtgcatgcaccaagtcccttacaaattgtggaaattgctagtactttttttaagtacacaaaagataacataaaaa |
51738720 |
T |
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| Q |
319 |
taagtat |
325 |
Q |
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||||||| |
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| T |
51738719 |
taagtat |
51738713 |
T |
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