View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12945_low_7 (Length: 292)
Name: NF12945_low_7
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12945_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 33739325 - 33739585
Alignment:
| Q |
18 |
atattgtcatccttataacataaataaggaaacatgcatccagcctacaggcgttttgcgcttgatctctgcaagggtgtgtggttcgacgctatcttgc |
117 |
Q |
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| T |
33739325 |
atattgtcatccttataacataaataaggaaacatgca----gcctacaggcgttttgcgcttgatctctgcaagggtgtgtggttcgacgctatcttgg |
33739420 |
T |
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| Q |
118 |
cgcatatttgacttttgcggacgaagtgtttcatttagagggggttatttttgggttgagtagtggcaat---aggttatggatatcatttattcagtgg |
214 |
Q |
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| T |
33739421 |
cgcatatttgacttttgcggacggagtgtttcatttagagggggttatttttgagttgagtagtggcgataggaggttatggatatcgtttattcagtgg |
33739520 |
T |
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| Q |
215 |
tcggttgcgtgtaggagtttgtttttagataatcatgcttattttggtgggtgttgttcgcatgg |
279 |
Q |
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| T |
33739521 |
tcgattgcgtgtaggagtttgtttttagataaccatgcttattttggtgggtgttgtgcgcatgg |
33739585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 47456929 - 47456885
Alignment:
| Q |
142 |
agtgtttcatttagagggggttatttttgggttgagtagtggcaat |
187 |
Q |
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| T |
47456929 |
agtgtttcatttagagggggtta-ttttgggttgagtggtggcaat |
47456885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 50589119 - 50589015
Alignment:
| Q |
137 |
gacgaagtgtttcatttagagggggttatttttgggttgagtagtggcaat---aggttatggatatcatttattcagtggtcggttgcgtgtaggagtt |
233 |
Q |
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| T |
50589119 |
gacggagtgtttcatttagagggggttatttttgggttgagtagtggcaatgggaggttatggatatcgttt-ttcggtggtcggtt-cttgtaggagtc |
50589022 |
T |
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| Q |
234 |
tgttttt |
240 |
Q |
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||||||| |
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| T |
50589021 |
tgttttt |
50589015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 16577499 - 16577579
Alignment:
| Q |
189 |
ggttatggatatcatttattcagtggtcggttgcgtgtaggagtttgtttttagataatcatgcttattttggtgggtgttg |
270 |
Q |
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| T |
16577499 |
ggttatggatatcattttttgagtggtcgttttcgtgaaagagtctg-ttttaggtgatgatgtttattttggtgggtgttg |
16577579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 17720619 - 17720573
Alignment:
| Q |
136 |
ggacgaagtgtttcatttagagggggttatttttgggttgagtagtg |
182 |
Q |
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| T |
17720619 |
ggacggagtgtttcatttagaggggtttatttttggggtgagtagtg |
17720573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 12296343 - 12296479
Alignment:
| Q |
136 |
ggacgaagtgtttcatttagagggg-gttatttttgggttgagtagtggcaat---aggttatggatatcatttattcagtggtcggttgcgtgtaggag |
231 |
Q |
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||||| ||||||||||||||||||| |||| ||||||| ||||||||||| || ||||||||||||| ||| ||||||||||| || || ||||| |
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| T |
12296343 |
ggacggagtgtttcatttagaggggtgtta-ttttgggatgagtagtggcgatgggtggttatggatatcgttt-ttcagtggtcgctt-cggaaaggag |
12296439 |
T |
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| Q |
232 |
tttgtttttagataatcatgcttattttggtgggtgttgt |
271 |
Q |
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| T |
12296440 |
tctgtttttaggtggtgatgtttattttggtgggtgttgt |
12296479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 21983728 - 21983684
Alignment:
| Q |
142 |
agtgtttcatttagagggggttatttttgggttgagtagtggcaat |
187 |
Q |
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| T |
21983728 |
agtgtttcatttaaaaggggttatttt-gggttgagtagtggcaat |
21983684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 27713243 - 27713300
Alignment:
| Q |
142 |
agtgtttcatttagaggggg--ttatttttgggttgagtagtggcaataggttatggat |
198 |
Q |
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| T |
27713243 |
agtgtttcatttagagggggggttatttt-gggttgagtagtggcgatgggttatggat |
27713300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 2063070 - 2063124
Alignment:
| Q |
166 |
ttttgggttgagtagtggcaat---aggttatggatatcatttattcagtggtcg |
217 |
Q |
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| T |
2063070 |
ttttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcg |
2063124 |
T |
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