View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12945_low_8 (Length: 261)
Name: NF12945_low_8
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12945_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 2592778 - 2592531
Alignment:
| Q |
1 |
acaactacatcatcaactcctctttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaatta |
100 |
Q |
| |
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||||||||||||||||| | ||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2592778 |
acaactacatcatcaacccatctttgttgcttc---ccttaaaacattaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaataatta |
2592682 |
T |
|
| Q |
101 |
tgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcc |
200 |
Q |
| |
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|||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2592681 |
tgttggttggtcttatttttagacttatcaaagagtaatatgctccacttggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcc |
2592582 |
T |
|
| Q |
201 |
cttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2592581 |
cttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
2592531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 2624311 - 2624075
Alignment:
| Q |
14 |
caactcctctttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtct |
113 |
Q |
| |
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|||||| |||||||| |||||||| ||||||||| |||||| ||||||||||||||| || |||||||||| |||||||||||||||||| |||||||| |
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| T |
2624311 |
caactcatctttgttacttctccc-ttcaaacattaaaaacaagatattgtttatttatttaatttcatgtggagaatcaacaattatgttggttggtct |
2624213 |
T |
|
| Q |
114 |
tctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaaca |
213 |
Q |
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| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2624212 |
tttttgtagacttatcaaagagtaatatgctccacttggccctttagacaacaaggatgaatgtgttccattctcaacaacacttcccttatccaaaaca |
2624113 |
T |
|
| Q |
214 |
gcaatcaaatcacagttttggatagtactcaacctatg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
2624112 |
gcaatcaaatcacagttttggatagtactcaacctatg |
2624075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 2671885 - 2672114
Alignment:
| Q |
21 |
tctttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgt |
120 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||| |
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| T |
2671885 |
tctttgttgcttctccc-ttcaaccatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaatagtaatgttggttggtcttctttgt |
2671983 |
T |
|
| Q |
121 |
agacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatca |
220 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
2671984 |
agacttaccaaagagtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatca |
2672083 |
T |
|
| Q |
221 |
aatcacagttttggatagtactcaacctatg |
251 |
Q |
| |
|
|||| || ||||| ||||||||||||||||| |
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|
| T |
2672084 |
aatcgcaattttgtatagtactcaacctatg |
2672114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 2440785 - 2440585
Alignment:
| Q |
51 |
aaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccactt |
150 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||||||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
2440785 |
aaacttgatcatgtttatttagttaatttcatggcaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccactt |
2440686 |
T |
|
| Q |
151 |
ggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2440685 |
ggccctttagacaacaaagatgaatgtgttcctttctcaacaacaattcccttatccaaaacagcaatcaaatcacagttttgaatagtactcaacctat |
2440586 |
T |
|
| Q |
251 |
g |
251 |
Q |
| |
|
| |
|
|
| T |
2440585 |
g |
2440585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 2568490 - 2568739
Alignment:
| Q |
1 |
acaactacatcatcaactcctctttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaatta |
100 |
Q |
| |
|
|||| ||||||||| | || ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2568490 |
acaagtacatcatcgattcttctttcttgcttctccc-ttcaaacatgaaaaacttagtattgtttatttagttgatttcatgtgaagaatacgaaatta |
2568588 |
T |
|
| Q |
101 |
tgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcc |
200 |
Q |
| |
|
|| ||||||||||||| ||||||| |||||||||||| | |||||||||||||| ||||| ||| ||||||||||||||||||||||||| | || |
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| T |
2568589 |
aattgtttggtcttctttgcagacttaccaaagagtaataagcaccacttggcccttttgacaataaatttgaatgtgttcctttctcaacaacaatgcc |
2568688 |
T |
|
| Q |
201 |
cttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
251 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
2568689 |
cttatccaaaacagcaatcaaatcacaattttgtatagtactcaacctatg |
2568739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 2640764 - 2640954
Alignment:
| Q |
61 |
ttgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttag |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||||||| ||||||||||| ||||||||| || || |
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|
| T |
2640764 |
ttgtttatttagttgatttcatgtgaagaaccaacaattgtattggttggtcttctttgtagacttactaaagagtaataaactccacttggtcccaaag |
2640863 |
T |
|
| Q |
161 |
acaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
251 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
2640864 |
acaacaaagatgaatgtgttcctttttcaacaacaatccccttatccaaaacagcaatcaaatcacaattttgtatagtactcaacctatg |
2640954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 2596070 - 2596298
Alignment:
| Q |
23 |
tttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttg--gtcttctttgt |
120 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| || || ||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||| |
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|
| T |
2596070 |
tttgtagcttctccc-ttcaaacatggaaa-ctggaccttgtttatttagttgatttcatgtgaagaatcaacaattgtattggttatagtcttctttgt |
2596167 |
T |
|
| Q |
121 |
agacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatca |
220 |
Q |
| |
|
||||||| |||||||||||| ||||||||| || ||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
2596168 |
agacttaccaaagagtaataaactccacttggtcccaaagataacaaagacgaatgtgttcctttctcaacaacaattcccttatccaagacagcaatca |
2596267 |
T |
|
| Q |
221 |
aatcacagttttggatagtactcaacctatg |
251 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |
|
|
| T |
2596268 |
aatcacaattttgtatagtactcaacctatg |
2596298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 2451450 - 2451307
Alignment:
| Q |
108 |
tggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatcc |
207 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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|
| T |
2451450 |
tggtcttctttgtagacttaccatagagtaataagctccacttggtcctttagacaacaaagatgaatgtgttcctttctcaataacactacccttatcc |
2451351 |
T |
|
| Q |
208 |
aaaacagcaatcaaatcacagttttggatagtactcaacctatg |
251 |
Q |
| |
|
|||||| |||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
2451350 |
aaaacaacaatcatatcacaattttgtatagtactcaacctatg |
2451307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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