View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12945_low_9 (Length: 246)
Name: NF12945_low_9
Description: NF12945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12945_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 27362789 - 27363022
Alignment:
| Q |
1 |
tatgtagctttgaaaaatactttccgataaatatgtgtctcannnnnnnatgtagctttaaaaaatactttccctctatttttatatttataagtcacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27362789 |
tatgtagctttgaaaaatactttccgataaatatgtgtctcatttttttatgtagctttaaaaaatactttccctctatttttatatttataagtcacaa |
27362888 |
T |
|
| Q |
101 |
atacttgtctcgtannnnnnnnnacatatcaatgataaatatatatctcgtgtttattctattcatcaatgagaaccatttgtctcgtgaattttgtacc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
27362889 |
atacttgtctcgtatttttttttacatatcaatgataaatatatatctcgtgtttattctattcatcaacgagaatcatttgtctcgtgaattttgtacc |
27362988 |
T |
|
| Q |
201 |
aatgatgaattttcgtgtttttctttttaatatt |
234 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| |
|
|
| T |
27362989 |
aatgatgaatttttgtgttttgctttttaatatt |
27363022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 45400941 - 45400786
Alignment:
| Q |
1 |
tatgtagctttgaaaaatactttccgataaatatgtgtctcannnnnnnatgtagctttaaaaaatactttccctctatttttatatttataagtcacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45400941 |
tatgtagctttgaaaaatactttccgataaatatgtgtctcatttttttatgtagctttaaaaaatactttccctctatttttatatttataagtcacaa |
45400842 |
T |
|
| Q |
101 |
atacttgtctcgtannnnnnnnnacatatcaatgataaatatatatctcgtgtttat |
157 |
Q |
| |
|
||| |||||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
45400841 |
atatttgtctcgta-ttttttttacgtatcaatgataaatatatatctcgtgcttat |
45400786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 19724623 - 19724522
Alignment:
| Q |
127 |
tatcaatgataaatatatatctcgtgtttattctattcatcaatgagaaccatttgtctcgtgaattttgtaccaatgatgaattttcgtgtttttcttt |
226 |
Q |
| |
|
|||||| || |||||| | || |||| ||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| ||| ||| |||| |
|
|
| T |
19724623 |
tatcaacgacaaatatttttcccgtgcttattctattcatcaatgagagccatttgtctcgtgaattttgtactaaggatgaatttttgtggtttgcttt |
19724524 |
T |
|
| Q |
227 |
tt |
228 |
Q |
| |
|
|| |
|
|
| T |
19724523 |
tt |
19724522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 22283016 - 22282941
Alignment:
| Q |
131 |
aatgataaatatatatctcgtgtttattctattcatcaatgagaaccatttgtctcgtgaattttgtaccaatgatgaat |
210 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||| ||||||| ||| ||||||| | | ||||||||||||||||||| |
|
|
| T |
22283016 |
aatgataaatatttatcccgtgttt-ttctattcgtcaatgaaaactatttgtcccat---ttttgtaccaatgatgaat |
22282941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University