View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12946_low_2 (Length: 382)
Name: NF12946_low_2
Description: NF12946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12946_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 45531540 - 45531186
Alignment:
| Q |
11 |
aaaatatgaaaatccatgtgaagttgacaagttagttatataaactcacttaaaaacgataaaccacagattaacaacaactcttaactctttctcaatt |
110 |
Q |
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| T |
45531540 |
aaaaaatgaaaatccatgtgaagttgacaagttagttatataaactcacttaaaaacgataaaccacagattaacaacaactcttaactctttctcaatt |
45531441 |
T |
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| Q |
111 |
ctcaatactttccctccttgtttaaagtaacttcgcaaacatttacacaatacacattacatcttcatcttcatcttcttctccgcatattctgcattgg |
210 |
Q |
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| T |
45531440 |
ctcaatactttccttccttgtttaaagtaacttcgcaaacatttacacaatacacattacatcttcatcttcatcttcttctccgcatattctgcattgg |
45531341 |
T |
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| Q |
211 |
tggcgcgtggttttgaagcgatggcgagagtagtgaaggaaccagaggaagtgatgagaatgcgaggaggttcagtgcttggaaagaagacaattctgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45531340 |
tggcgcgtggttttgaagcgatggcgagagtagtgaaggaaccagaggaagtgatgagaatgcgaggaggttcagtgcttggaaagaagacaattctgaa |
45531241 |
T |
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| Q |
311 |
gagtgaccattttcctggttgtcaaaataaacgtctttctcctcagatcgaaggt |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45531240 |
gagtgaccattttcctggttgtcaaaataaacgtctttctcctcagatcgaaggt |
45531186 |
T |
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