View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12947_high_1 (Length: 623)
Name: NF12947_high_1
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12947_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 157 - 604
Target Start/End: Original strand, 369435 - 369882
Alignment:
| Q |
157 |
tggccaataggcgctaatttgtttgacaaagatggaacaagtcaagtgtgacaatgaaatagaatgtgaaagagcaacagttgcagcttttgtaactgca |
256 |
Q |
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| T |
369435 |
tggccaataggcgctaatttgtttgacaaagatggaacaagtcaagtgtgacaatgaaatagaatgtgaaagagcaacagttgcagcttttgtaactgca |
369534 |
T |
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| Q |
257 |
tatataacaccattgtaactaaaaattaatactagttctccttgaaggtgtagaattgataaagccactcgactcatacgccgtgtagtccattgcaccc |
356 |
Q |
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| T |
369535 |
tatataacaccattataactaaaaattaatactagttctccttgaaggtgtagaattgataaagccactcggctcatacgccgtgtagtccattgcaccc |
369634 |
T |
|
| Q |
357 |
gaatctattatccatccatcatagtcacatatgatagcactgggtaatgagaaaccaaggatacctaagtcactaagtgtttaggagccatcatattaag |
456 |
Q |
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| T |
369635 |
gaatctattatccatccatcatagtcacatatgatagcactgggtaatgagaaaccaaggatacctaagtcactaagtgtttaggagccatcatattaag |
369734 |
T |
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| Q |
457 |
ttggctcaaatgattgtgattgtagcagcaaatccaatgatagttgtggatctgcatgtgcaatggtagcgtgtcctgacccagttttcatgccaccagt |
556 |
Q |
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| T |
369735 |
ttggctcaaatgattgtgattgtagcagcaaatccaatgatagttgtggatctgcatgtgcaatggtagcgtgtcctgacccagttttcatgccaccagt |
369834 |
T |
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| Q |
557 |
aaagacaaacatgtaatttagagtttagatcatcaagcaggttgctgg |
604 |
Q |
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| T |
369835 |
aaagacaaacatgtaatttagagtttagatcatcaagcaggttgctgg |
369882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 365786 - 365920
Alignment:
| Q |
16 |
atatgtttatgctttatatctagagaattttgcctataggtggttctgcgtatgttgaaatcatccatataatacaacccaccttttttagtacaatgac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
365786 |
atatgtttatgctttatatctagagaattttgcctatagttggttctgcgtatgttgaaatcatccatataatacaacccaccttttttagtacaatgac |
365885 |
T |
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| Q |
116 |
taatgattttcttggtgagaatatcatgaagaaaa |
150 |
Q |
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| T |
365886 |
taatgatttccttggtgagaatatcatgaagaaaa |
365920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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