View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12947_high_22 (Length: 219)
Name: NF12947_high_22
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12947_high_22 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 45729756 - 45729553
Alignment:
| Q |
16 |
caaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgc |
115 |
Q |
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| T |
45729756 |
caaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgc |
45729657 |
T |
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| Q |
116 |
atagccaaaacaccagctccaaccgtaagcaaaacaatggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaatgcagtga |
215 |
Q |
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| T |
45729656 |
atagccaaaacaccagctccaaccgtaagcaaaacaacggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaacgcagtga |
45729557 |
T |
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| Q |
216 |
aacc |
219 |
Q |
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|||| |
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| T |
45729556 |
aacc |
45729553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 45725567 - 45725364
Alignment:
| Q |
16 |
caaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgc |
115 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45725567 |
caaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgcatattgttttgcagaaacaccagcaggacgatcactactcgtatgc |
45725468 |
T |
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| Q |
116 |
atagccaaaacaccagctccaaccgtaagcaaaacaatggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaatgcagtga |
215 |
Q |
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||||||||||||||||| ||||| |||||||||| || ||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||| || |||| |
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| T |
45725467 |
atagccaaaacaccagcaccaacagtaagcaaaaaaacggcgtttacggtaaatgctgtaaatttctgtttcacaagaagaaaagcgaaaaacgcggtga |
45725368 |
T |
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| Q |
216 |
aacc |
219 |
Q |
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|||| |
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| T |
45725367 |
aacc |
45725364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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