View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12947_high_3 (Length: 544)
Name: NF12947_high_3
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12947_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 15263429 - 15263732
Alignment:
| Q |
13 |
aatatattaaagtagtaccaaatatatgaagtgtttgattaattaatgaccactagttaggcataatagtttcagacatactttgcagttcactacnnnn |
112 |
Q |
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| T |
15263429 |
aatatattaaagtagtaccaaatatatgaagtgtttgattaattaatgaccactagttaggcataatagtttcagacatactttgcagttcactactttt |
15263528 |
T |
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| Q |
113 |
nnnctcaccaacttggtttgtttctttgctcaagtactccttggacacatctataagagttaaatatgtgttgaagcaatgttgggattaaagacaaaaa |
212 |
Q |
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| T |
15263529 |
tttctcaccaacttggtttttttctttgctcaagtactccttggacacatctataagagttaaatatgtgttgaagcaatgttgggattaaagacaaaaa |
15263628 |
T |
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| Q |
213 |
tttgattttaacattttcgatagtagacgaagatataaaaggccaaatactattgtatcttgttttcaaaaagaaatcaaatgaaataatttgttaattt |
312 |
Q |
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| T |
15263629 |
tttgattttaacattttcgatagtagacaaagatat-aaaggccaaatactattgtatcttgttttcaaaaagaaatcaaatgaaatgatttgttaattt |
15263727 |
T |
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| Q |
313 |
agatg |
317 |
Q |
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||||| |
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| T |
15263728 |
agatg |
15263732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 353 - 531
Target Start/End: Original strand, 15263770 - 15263951
Alignment:
| Q |
353 |
ttagcagtgttgatgtgttcatgtctatattgtatcaggtgttcgtactttatagtcgacagttctattcacaattgaagaagtaaattaaacattttga |
452 |
Q |
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|||||||||||||||||||| |||||||||| | |||||| | |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
15263770 |
ttagcagtgttgatgtgttcgtgtctatattatgtcaggtatccgtactttatagtcaacagtttcattcacaattgaagaagtaaattaaacattttga |
15263869 |
T |
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| Q |
453 |
agttgcaatc---nnnnnnnnnnnggaagaactgagtaagattgtaattattatcaattaaagtaacgataatgactatttt |
531 |
Q |
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| T |
15263870 |
agttgcaatcttttttttttttttggaagaactcattaagattgtaattattatcaattaaagtgacgataatgactatttt |
15263951 |
T |
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