View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12947_high_5 (Length: 462)

Name: NF12947_high_5
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12947_high_5
NF12947_high_5
[»] chr7 (3 HSPs)
chr7 (17-321)||(43375555-43375867)
chr7 (200-267)||(22715799-22715865)
chr7 (411-455)||(43375965-43376009)
[»] chr5 (5 HSPs)
chr5 (163-246)||(8230780-8230863)
chr5 (151-225)||(28975557-28975630)
chr5 (163-219)||(3622232-3622288)
chr5 (193-246)||(22658862-22658916)
chr5 (168-221)||(37484826-37484879)
[»] chr1 (8 HSPs)
chr1 (169-291)||(17368355-17368476)
chr1 (173-221)||(33939624-33939672)
chr1 (163-219)||(49315764-49315820)
chr1 (168-246)||(37719054-37719133)
chr1 (150-224)||(7537008-7537082)
chr1 (171-221)||(44448526-44448576)
chr1 (195-246)||(24671193-24671245)
chr1 (169-221)||(31108762-31108814)
[»] chr2 (3 HSPs)
chr2 (141-219)||(21835969-21836047)
chr2 (163-219)||(1208621-1208677)
chr2 (146-246)||(28640142-28640243)
[»] chr6 (4 HSPs)
chr6 (150-219)||(6793486-6793555)
chr6 (163-246)||(10349157-10349239)
chr6 (171-221)||(24226071-24226121)
chr6 (159-246)||(32267020-32267108)
[»] chr8 (8 HSPs)
chr8 (169-221)||(35910591-35910643)
chr8 (150-219)||(6473997-6474064)
chr8 (201-246)||(44077746-44077792)
chr8 (163-246)||(226348-226430)
chr8 (163-246)||(702761-702843)
chr8 (163-246)||(739971-740053)
chr8 (163-246)||(863866-863948)
chr8 (169-221)||(42127211-42127263)
[»] chr3 (1 HSPs)
chr3 (163-217)||(52404698-52404752)
[»] chr4 (2 HSPs)
chr4 (159-224)||(52198349-52198414)
chr4 (169-221)||(33913960-33914012)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 43375555 - 43375867
Alignment:
Q  17 agttttgactaggtacaatttgaatctccgaatgttttagtgcatgcaaccttgatccaa----------cctgcaagcgtgtgatacactaccaaatta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||||     
T  43375555 agttttgactaggtacaatttgaatctccgaatgttttagtgcatgcaaccttgatccaagttatttttacctgcaagcgtgtgatacaccaccaaattg 43375654  T
Q  107 gggcgtatccaatacacactttagtgacattgtgttggatgattttggtaattttatctcaatctctctcctaaccaataatttcatttcattaaaataa 206  Q
    |||||||||  |||||||||| |||||| |||| |||||||| |||||| |||||||||| |||||||| |||| |||||||||||||||||||||||||    
T  43375655 gggcgtatcggatacacacttcagtgactttgttttggatgactttggtgattttatctctatctctcttctaatcaataatttcatttcattaaaataa 43375754  T
Q  207 tttattttaatcatttattgtcactctctttcatctaaaaatacattgaaagtcatcaaatttatccaacacaaggtcactgaaatgccattcgggagta 306  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||| |||||||||||||| ||||||||||  |||||||  |||    
T  43375755 tttattttaatcatttattgtcagtctctttcatccaaaaatacatt-aaagtcaccaaagttatccaacacaagatcactgaaat-tcattcggacgta 43375852  T
Q  307 ctggagtagtagtac 321  Q
    |||||||||||||||    
T  43375853 ctggagtagtagtac 43375867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 22715865 - 22715799
Alignment:
Q  200 aaaataatttattttaatcatttat-tgtcactctctttcatctaaaaatacattgaaagtcatcaaat 267  Q
    ||||||||||||||||||||||||| | |||||||||||||||| |||||||| | |||||||||||||    
T  22715865 aaaataatttattttaatcatttatctatcactctctttcatct-aaaatacact-aaagtcatcaaat 22715799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 43375965 - 43376009
Alignment:
Q  411 ccgtgttatatgtaaaggataacattggtttttgttatattcttc 455  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  43375965 ccgtgttatatgtaaacgataacattggtttttgttattttcttc 43376009  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 8230863 - 8230780
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcattt-attgtcactctctttcatctaaaa 246  Q
    |||| ||||||||||||| |||||| ||  | |||| ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  8230863 tctctatctctctcctaatcaataacttt-tctcatcaaaataatttattttaatcatttaatcatcactctctttcatctaaaa 8230780  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 28975557 - 28975630
Alignment:
Q  151 ttggtaattttatctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatttatt 225  Q
    ||||| ||||| |||| |||||||||||||||||| ||||   || || ||||||||||||||||||||||||||    
T  28975557 ttggtgattttgtctccatctctctcctaaccaatcatttttatt-atcaaaataatttattttaatcatttatt 28975630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 3622288 - 3622232
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatca 219  Q
    |||| |||||||| ||||||||||||||  | |||| ||||||||||||||||||||    
T  3622288 tctctatctctcttctaaccaataattttctctcatcaaaataatttattttaatca 3622232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 22658862 - 22658916
Alignment:
Q  193 tttcattaaaataatttattttaatcatttatt-gtcactctctttcatctaaaa 246  Q
    ||||||| ||||||||||||||||||||| |||  ||| ||||||||||||||||    
T  22658862 tttcatttaaataatttattttaatcattcattcatcattctctttcatctaaaa 22658916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 37484826 - 37484879
Alignment:
Q  168 atctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt 221  Q
    |||||| || |||| ||||||||  |||||| ||||||||||||||||||||||    
T  37484826 atctctttcataactaataattttctttcatcaaaataatttattttaatcatt 37484879  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 291
Target Start/End: Complemental strand, 17368476 - 17368355
Alignment:
Q  169 tctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt-tattgtcactctctttcatctaaaaatacattgaaagtcatcaaat 267  Q
    ||||| |||||||||||||||   | |||| |||||||||||||||||| |||  ||  |||||||||||||||| |||||||| | ||||||| ||||     
T  17368476 tctctttcctaaccaataattctctctcatcaaaataatttattttaattattcaatcatcactctctttcatct-aaaatacact-aaagtcaacaaag 17368379  T
Q  268 ttatccaacacaaggtcactgaaa 291  Q
    | ||||||||||| || |||||||    
T  17368378 tcatccaacacaaagtgactgaaa 17368355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 33939672 - 33939624
Alignment:
Q  173 tctcctaaccaataatttcatttcattaaaataatttattttaatcatt 221  Q
    |||||||||||||||||   | |||||||||||||||||||||||||||    
T  33939672 tctcctaaccaataattctttatcattaaaataatttattttaatcatt 33939624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 49315820 - 49315764
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatca 219  Q
    |||| ||||||||| ||| ||||||||  ||||||| ||||||||||||||||||||    
T  49315820 tctctatctctctcataatcaataattatatttcatcaaaataatttattttaatca 49315764  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 37719054 - 37719133
Alignment:
Q  168 atctctctcctaaccaataatttcatttcattaaaataatttattttaatcattt-attgtcactctctttcatctaaaa 246  Q
    |||| |||||||||||||||||   | |||| |||||||||||||||| |||||| ||  ||||||| ||||||||||||    
T  37719054 atctttctcctaaccaataattatctctcatcaaaataatttattttattcatttcatcatcactctttttcatctaaaa 37719133  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 7537082 - 7537008
Alignment:
Q  150 tttggtaattttatctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatttat 224  Q
    |||||| | ||| |||| |||||||||||||||||| | |   ||| || |||||||||||||||||||||||||    
T  7537082 tttggtgactttgtctctatctctctcctaaccaatcactctcttttatcaaaataatttattttaatcatttat 7537008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 44448576 - 44448526
Alignment:
Q  171 tctctcctaaccaataatttcatttcattaaaataatttattttaatcatt 221  Q
    |||||||||| |||| |||| || ||||| |||||||||||||||||||||    
T  44448576 tctctcctaatcaatcattttatctcatttaaataatttattttaatcatt 44448526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 24671193 - 24671245
Alignment:
Q  195 tcattaaaataatttattttaatcatttatt-gtcactctctttcatctaaaa 246  Q
    ||||| ||||||||||||||||||||| |||  ||||||||| ||||||||||    
T  24671193 tcatttaaataatttattttaatcattcattcatcactctctctcatctaaaa 24671245  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 31108814 - 31108762
Alignment:
Q  169 tctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt 221  Q
    ||||||||||||||||||||||  |  ||| |||||| |||||||||||||||    
T  31108814 tctctctcctaaccaataattttctcacatcaaaatagtttattttaatcatt 31108762  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 21835969 - 21836047
Alignment:
Q  141 ttggatgattttggtaattttatctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatca 219  Q
    |||| |||||||||| | ||| |||| |||||| ||||||||||||||||    |||| ||||||||||||||||||||    
T  21835969 ttgggtgattttggtgactttgtctctatctctttcctaaccaataatttttcctcatcaaaataatttattttaatca 21836047  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 1208621 - 1208677
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatca 219  Q
    |||| ||||||||| ||||||||||||   | |||||||||||||||||||||||||    
T  1208621 tctctatctctctcttaaccaataattctctctcattaaaataatttattttaatca 1208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 28640243 - 28640142
Alignment:
Q  146 tgattttggtaattttatctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatttat-tgtcactctctttcatctaa 244  Q
    |||||||||| | ||| |||| |||| ||||||||  ||||| |   ||| || |||||||||||||||||||||| || | ||| ||||||||||||||    
T  28640243 tgattttggtgactttgtctctatctttctcctaataaataactctcttttatcaaaataatttattttaatcattcatctatcattctctttcatctaa 28640144  T
Q  245 aa 246  Q
    ||    
T  28640143 aa 28640142  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 6793486 - 6793555
Alignment:
Q  150 tttggtaattttatctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatca 219  Q
    |||||| ||||| |||| |||||| |||||||||||||||   | |||| ||||||||||||||||||||    
T  6793486 tttggtgattttgtctctatctctatcctaaccaataattatctctcatcaaaataatttattttaatca 6793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 10349157 - 10349239
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatttattgtcactctctttcatctaaaa 246  Q
    |||| ||||||||||||||| |||||||  | || |||||||||||||||||||| ||| | | | ||||| ||||||||||||    
T  10349157 tctctatctctctcctaaccgataatttt-tctccttaaaataatttattttaattattcaatattactctttttcatctaaaa 10349239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 24226071 - 24226121
Alignment:
Q  171 tctctcctaaccaataatttcatttcattaaaataatttattttaatcatt 221  Q
    |||||||||||||||||||   | |||| ||||||||||||||||||||||    
T  24226071 tctctcctaaccaataattctctgtcatcaaaataatttattttaatcatt 24226121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 32267108 - 32267020
Alignment:
Q  159 tttatctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatttat-tgtcactctctttcatctaaaa 246  Q
    ||||||| ||||||| | |||||||||||||   || ||| | |||||||||||||||||||| || | ||| |||| |||||||||||    
T  32267108 tttatcttaatctcttttctaaccaataattctcttccatcagaataatttattttaatcattaatctatcattctcattcatctaaaa 32267020  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 35910591 - 35910643
Alignment:
Q  169 tctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt 221  Q
    ||||||||||||||||||||| | | |||| ||||| ||||||||||||||||    
T  35910591 tctctctcctaaccaataattccctctcatcaaaatgatttattttaatcatt 35910643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 6474064 - 6473997
Alignment:
Q  150 tttggtaattttatctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatca 219  Q
    |||||| ||||| |||  |||||||| ||||| |||||||  || |||||||||||||||||||||||||    
T  6474064 tttggtgattttgtctatatctctcttctaactaataatt--atctcattaaaataatttattttaatca 6473997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 44077792 - 44077746
Alignment:
Q  201 aaataatttattttaatcatttatt-gtcactctctttcatctaaaa 246  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||    
T  44077792 aaataatttattttaattatttattcatcactctctttcatctaaaa 44077746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 226430 - 226348
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt-tattgtcactctctttcatctaaaa 246  Q
    |||| |||||||||||||| |||||||   | |||| || |||||||||||||||||||  ||| | ||||||||||||||||||    
T  226430 tctctatctctctcctaactaataattc--tctcatcaacataatttattttaatcattcaattataactctctttcatctaaaa 226348  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 702843 - 702761
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt-tattgtcactctctttcatctaaaa 246  Q
    |||| |||||||||||||| |||||||   | |||| || |||||||||||||||||||  ||| | ||||||||||||||||||    
T  702843 tctctatctctctcctaactaataattc--tctcatcaacataatttattttaatcattcaattataactctctttcatctaaaa 702761  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 740053 - 739971
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt-tattgtcactctctttcatctaaaa 246  Q
    |||| |||||||||||||| |||||||   | |||| || |||||||||||||||||||  ||| | ||||||||||||||||||    
T  740053 tctctatctctctcctaactaataattc--tctcatcaacataatttattttaatcattcaattataactctctttcatctaaaa 739971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 863948 - 863866
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt-tattgtcactctctttcatctaaaa 246  Q
    |||| |||||||||||||| |||||||   | |||| || |||||||||||||||||||  ||| | ||||||||||||||||||    
T  863948 tctctatctctctcctaactaataattc--tctcatcaacataatttattttaatcattcaattataactctctttcatctaaaa 863866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 42127263 - 42127211
Alignment:
Q  169 tctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt 221  Q
    |||| ||||||||||||||||   | |||| ||||||||||||||||||||||    
T  42127263 tctccctcctaaccaataattatttctcatcaaaataatttattttaatcatt 42127211  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 52404698 - 52404752
Alignment:
Q  163 tctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaat 217  Q
    |||| ||||||||||||| ||||||||   |||||| ||||||||||||||||||    
T  52404698 tctctatctctctcctaatcaataattatttttcatcaaaataatttattttaat 52404752  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 52198349 - 52198414
Alignment:
Q  159 tttatctcaatctctctcctaaccaataatttcatttcattaaaataatttattttaatcatttat 224  Q
    |||||||| |||||  | |||||||||||||   | |||| |||||||||||||||||||||||||    
T  52198349 tttatctctatctcgattctaaccaataattatctctcatcaaaataatttattttaatcatttat 52198414  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 33913960 - 33914012
Alignment:
Q  169 tctctctcctaaccaataatttcatttcattaaaataatttattttaatcatt 221  Q
    |||||||||||||||||||||   | |||| ||||| ||||||||||||||||    
T  33913960 tctctctcctaaccaataattctctctcatcaaaatgatttattttaatcatt 33914012  T

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