View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12947_high_6 (Length: 453)

Name: NF12947_high_6
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12947_high_6
NF12947_high_6
[»] chr3 (13 HSPs)
chr3 (18-435)||(38181254-38181671)
chr3 (311-387)||(39047659-39047735)
chr3 (281-387)||(51312927-51313033)
chr3 (147-234)||(29504802-29504889)
chr3 (146-232)||(28860582-28860668)
chr3 (289-380)||(42426187-42426274)
chr3 (146-225)||(20124212-20124291)
chr3 (308-379)||(44765318-44765389)
chr3 (301-379)||(3432602-3432680)
chr3 (299-380)||(8365225-8365306)
chr3 (323-379)||(25118635-25118691)
chr3 (146-198)||(45965799-45965851)
chr3 (182-234)||(47337242-47337294)
[»] chr5 (13 HSPs)
chr5 (281-384)||(17317341-17317444)
chr5 (279-380)||(35626556-35626657)
chr5 (283-387)||(25254876-25254980)
chr5 (283-387)||(25318666-25318770)
chr5 (309-387)||(33085275-33085353)
chr5 (308-380)||(14157038-14157110)
chr5 (320-387)||(4858075-4858141)
chr5 (147-261)||(9900231-9900345)
chr5 (323-380)||(1638020-1638077)
chr5 (146-227)||(3620907-3620988)
chr5 (150-219)||(33391488-33391557)
chr5 (119-232)||(39643213-39643326)
chr5 (146-198)||(1189371-1189423)
[»] chr7 (11 HSPs)
chr7 (281-387)||(32956494-32956600)
chr7 (146-260)||(30935240-30935354)
chr7 (175-226)||(32296393-32296444)
chr7 (146-233)||(12427865-12427952)
chr7 (323-376)||(31245277-31245330)
chr7 (307-374)||(2256472-2256539)
chr7 (146-260)||(10524946-10525058)
chr7 (158-220)||(13383768-13383830)
chr7 (151-200)||(21248989-21249038)
chr7 (322-379)||(23070264-23070321)
chr7 (307-379)||(7833571-7833643)
[»] chr2 (10 HSPs)
chr2 (280-422)||(8793777-8793926)
chr2 (309-379)||(31915090-31915160)
chr2 (323-380)||(19028482-19028539)
chr2 (182-260)||(6511081-6511159)
chr2 (309-379)||(35005219-35005289)
chr2 (188-260)||(32502886-32502958)
chr2 (309-362)||(8033332-8033385)
chr2 (323-380)||(13832214-13832271)
chr2 (103-172)||(17184765-17184834)
chr2 (387-428)||(18058481-18058522)
[»] chr4 (20 HSPs)
chr4 (283-387)||(42009628-42009732)
chr4 (176-292)||(45921765-45921882)
chr4 (271-380)||(2392629-2392738)
chr4 (182-227)||(53924481-53924526)
chr4 (309-380)||(32906160-32906231)
chr4 (284-362)||(47519295-47519373)
chr4 (312-377)||(35422420-35422485)
chr4 (146-223)||(39051298-39051375)
chr4 (176-260)||(49448187-49448271)
chr4 (309-379)||(33395333-33395403)
chr4 (309-379)||(37626716-37626786)
chr4 (92-198)||(55264376-55264481)
chr4 (182-234)||(54458704-54458756)
chr4 (269-380)||(34341380-34341491)
chr4 (310-380)||(21865189-21865258)
chr4 (310-380)||(21921050-21921119)
chr4 (285-334)||(38432118-38432167)
chr4 (323-379)||(41163052-41163108)
chr4 (151-203)||(49448246-49448298)
chr4 (273-380)||(53650000-53650108)
[»] scaffold0042 (1 HSPs)
scaffold0042 (282-387)||(83574-83679)
[»] chr6 (6 HSPs)
chr6 (279-387)||(2838968-2839075)
chr6 (186-227)||(23765853-23765894)
chr6 (280-380)||(28985482-28985580)
chr6 (323-374)||(1407374-1407425)
chr6 (300-387)||(23131479-23131566)
chr6 (282-380)||(7592697-7592795)
[»] chr1 (9 HSPs)
chr1 (98-280)||(6219668-6219845)
chr1 (280-378)||(4064112-4064210)
chr1 (146-260)||(7790344-7790458)
chr1 (147-227)||(845021-845101)
chr1 (309-379)||(8772445-8772515)
chr1 (146-227)||(27293312-27293393)
chr1 (191-245)||(28504790-28504844)
chr1 (146-226)||(38783924-38784004)
chr1 (280-380)||(46536619-46536719)
[»] chr8 (10 HSPs)
chr8 (130-225)||(10028759-10028854)
chr8 (146-260)||(21136619-21136733)
chr8 (182-260)||(33229553-33229631)
chr8 (300-374)||(29374562-29374636)
chr8 (314-380)||(38730017-38730082)
chr8 (182-243)||(41424600-41424661)
chr8 (185-225)||(5846959-5846999)
chr8 (130-198)||(10028667-10028735)
chr8 (130-198)||(32029421-32029488)
chr8 (280-379)||(41168672-41168772)
[»] scaffold0007 (1 HSPs)
scaffold0007 (323-380)||(246557-246614)
[»] scaffold0103 (1 HSPs)
scaffold0103 (384-422)||(28845-28883)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 38181254 - 38181671
Alignment:
Q  18 gatttaattttaagatagattgcgcccacctctttnnnnnnnnttcatttacggttcatcatatannnnnnnnnagtaacccactaaattggttcatgtc 117  Q
    |||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||         ||||| ||||||||||||||||||||    
T  38181254 gatttaattttaagatagattgcgcccacctctttaaaaaaaatccatttacggttcatcatatatttttttttagtaaaccactaaattggttcatgtc 38181353  T
Q  118 tttataagctactctcaaatttatcacggactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||||||    
T  38181354 tttataagctactctcaaatttatcacggactctattaatatttcaaactagtctccatctttatcaaaagtttctcaatttgatcattatctttatgtt 38181453  T
Q  218 tttgtcacatcacgaggaatctaattaaaaagtttttgacaaaataaggactaatttaaaataggagaatgttaatgagttcccttgagatattggttaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38181454 tttgtcacatcacgaggaatctaattaaaaagtttttgacaaaataaggactaatttaaaataggagaatgttaatgagttcccttgagatattggttaa 38181553  T
Q  318 ggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaagtttataagacaaaatttctattagtagatttcttaa 417  Q
     |||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  38181554 agtgttaaaattagttattttgcatcaaaaagtggtgtgattattgctaagacaaatgtaaaagtatataagacaaaatttctattagtagatttcttaa 38181653  T
Q  418 tcaatatctttcggacac 435  Q
    ||||| ||||||| ||||    
T  38181654 tcaatgtctttcgaacac 38181671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 39047735 - 39047659
Alignment:
Q  311 tggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaagtttata 387  Q
    |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||    
T  39047735 tggttaaggtgttaaaattagtaagtttgcattaaaaagtggtatggttattactaagacaaaagtaaaagtttata 39047659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 51313033 - 51312927
Alignment:
Q  281 ggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    ||||||||| ||| ||| |||||||   ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  51313033 ggagaatgtcaataagtacccttgaagcattggttaatgtgttaaaattagtaagtttgcatcaaaaagtggtatgattattaccaagacaaaaataaaa 51312934  T
Q  381 gtttata 387  Q
    | |||||    
T  51312933 gcttata 51312927  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 29504802 - 29504889
Alignment:
Q  147 actctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgagg 234  Q
    |||||| |||||||| ||||| ||| |  ||||||| ||||||||||||||| | ||| |||||||||| ||||||||||| ||||||    
T  29504802 actctaataatattttaaactagtcattgtctttattaaaagtttttcaattaggtcaatgtctttatgcttttgtcacatgacgagg 29504889  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 28860668 - 28860582
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtc-tttatgtttttgtcacatcacga 232  Q
    |||||||||||||||||||||| ||| || | ||| |||||||||| |||||| ||||||| || |||||||||||||| ||| ||||    
T  28860668 gactctattaatatttcaaactagtc-tcttttttgtcaaaagtttctcaattagatcattatcttttatgtttttgtcccatgacga 28860582  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 42426187 - 42426274
Alignment:
Q  289 ttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    ||||||||  ||||||||| |||| |||| ||||||||||    |||||||||| |||||||||||| ||||||  |||||||||| |||||    
T  42426187 ttaatgagggcccttgagacattgattaaagtgttaaaat----aagtttgcataaaaaagtggtgtaattattgttaagacaaaaataaaa 42426274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 20124291 - 20124212
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcac 225  Q
    |||||||| ||||||||||| | ||| |  | ||| ||||||||||||||||| ||||  ||||| ||||||||||||||    
T  20124291 gactctatcaatatttcaaaatagtcattgtttttgtcaaaagtttttcaattagatccatgtctctatgtttttgtcac 20124212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 44765389 - 44765318
Alignment:
Q  308 tattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||| |||| || ||||||| |||||||||||||  ||||||||||| |||||| |||||| | |||||||    
T  44765389 tattgattaaagtattaaaataagtaagtttgcattgaaaagtggtgtaattattgctaagaaataagtaaa 44765318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 3432602 - 3432680
Alignment:
Q  301 cttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    |||||| |||||||||| ||  |||||| | ||||||||||||||||| || ||| |||||| ||||||  ||||||||    
T  3432602 cttgaggtattggttaaagtactaaaataaataagtttgcatcaaaaaatgatgtaattattgctaagaacaaagtaaa 3432680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 8365225 - 8365306
Alignment:
Q  299 cccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||| | |||||||||| |||||||||||||||||||| ||  ||||| |||||| ||| ||  | |||||||| |||||    
T  8365225 cccttggggtattggttaaagtgttaaaattagtaagttttcaataaaaaatggtgtaattttttattagacaaaactaaaa 8365306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 25118691 - 25118635
Alignment:
Q  323 taaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    |||||| |||||||||||||  ||||||||||| || ||| |||||| |||||||||    
T  25118691 taaaataagtaagtttgcattgaaaagtggtgtaatcattgctaagaaaaaagtaaa 25118635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 45965851 - 45965799
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatt 198  Q
    |||||||||||||||||||||| ||  | |||||| |||||||||| ||||||    
T  45965851 gactctattaatatttcaaactagttattatctttttcaaaagtttctcaatt 45965799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 47337242 - 47337294
Alignment:
Q  182 tcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgagg 234  Q
    ||||||||||||||||| ||||  ||||| ||||||||||||| || ||||||    
T  47337242 tcaaaagtttttcaattagatccctgtctctatgtttttgtcatataacgagg 47337294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 17317341 - 17317444
Alignment:
Q  281 ggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||||||||| ||||  |||||||  ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  17317341 ggagaatgttaacgagtgtccttgaggcattggttaaagtgttaaaattaataaatttgcatcaaaaagtggtgtgattattattaagacaaaggtaaaa 17317440  T
Q  381 gttt 384  Q
    ||||    
T  17317441 gttt 17317444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 35626556 - 35626657
Alignment:
Q  279 taggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaa 378  Q
    ||||||||||||||||||| || |||| | || ||||||||||||||||||||||| ||||||| ||||||| ||| |||||||  ||||||||||||||    
T  35626556 taggagaatgttaatgagtgcctttgatacatgggttaaggtgttaaaattagtaaatttgcataaaaaagtagtgcgattattggtaagacaaaagtaa 35626655  T
Q  379 aa 380  Q
    ||    
T  35626656 aa 35626657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 387
Target Start/End: Complemental strand, 25254980 - 25254876
Alignment:
Q  283 agaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaagt 382  Q
    ||||||||||||||| ||||||| | || |||||| ||||||||||||||||||||| || ||||| | |||||||||||  |||||||||||||| |||    
T  25254980 agaatgttaatgagtacccttgaaacataggttaacgtgttaaaattagtaagtttgtataaaaaattagtgtgattattgttaagacaaaagtaacagt 25254881  T
Q  383 ttata 387  Q
    |||||    
T  25254880 ttata 25254876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 387
Target Start/End: Complemental strand, 25318770 - 25318666
Alignment:
Q  283 agaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaagt 382  Q
    ||||||||||||||| ||||||| | || |||||| ||||||||||||||||||||| || ||||| | |||||||||||  |||||||||||||| |||    
T  25318770 agaatgttaatgagtacccttgaaacataggttaacgtgttaaaattagtaagtttgtataaaaaattagtgtgattattgttaagacaaaagtaacagt 25318671  T
Q  383 ttata 387  Q
    |||||    
T  25318670 ttata 25318666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 33085275 - 33085353
Alignment:
Q  309 attggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaagtttata 387  Q
    ||||||||| ||||||||||||| ||||||||||  |||||||||||  ||||| ||||||||||||||||| ||||||    
T  33085275 attggttaaagtgttaaaattagcaagtttgcatacaaaagtggtgtagttattgctaagacaaaagtaaaaatttata 33085353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 14157110 - 14157038
Alignment:
Q  308 tattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||||||| ||  |||||| |||||||||||||||| ||||| ||| ||||||  ||||||||||||||||    
T  14157110 tattggttaaagttgtaaaataagtaagtttgcatcaataagtgatgtaattattgataagacaaaagtaaaa 14157038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 4858075 - 4858141
Alignment:
Q  320 tgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaagtttata 387  Q
    |||||||||||||||||||| || ||||| || ||| |||||| ||||||||||||||||| ||||||    
T  4858075 tgttaaaattagtaagtttgtattaaaaa-tgatgtaattattgctaagacaaaagtaaaaatttata 4858141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 9900231 - 9900345
Alignment:
Q  147 actctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaaa 246  Q
    ||||||||||||||| ||| |  | || |||||| |||||||||| |||||| |||| |||| | ||||||||||||||||  | ||| || ||||| |     
T  9900231 actctattaatattttaaaataatttttatctttgtcaaaagtttctcaattagatctttgtatctatgtttttgtcacatgtcaagggatttaattgag 9900330  T
Q  247 aagtttttgacaaaa 261  Q
    || ||||||||||||    
T  9900331 aaatttttgacaaaa 9900345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 1638077 - 1638020
Alignment:
Q  323 taaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||| | ||||||||||||||||||| |||| |||||| |||||| ||||||||||    
T  1638077 taaaataaataagtttgcatcaaaaagttgtgtaattattgctaagaaaaaagtaaaa 1638020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 3620988 - 3620907
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacat 227  Q
    |||||| |||||||| |||||| ||||   | ||||||||||||||||||||| | ||  |||||||||||||| |||||||    
T  3620988 gactctgttaatattacaaactagtctcagtttttatcaaaagtttttcaattaggtctctgtctttatgttttggtcacat 3620907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 33391557 - 33391488
Alignment:
Q  150 ctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttt 219  Q
    |||||| ||||||||| | |||   ||||||||||||||||| |||||||| ||| ||||||||||||||    
T  33391557 ctattagtatttcaaattagtccctatctttatcaaaagtttctcaatttggtcaatgtctttatgtttt 33391488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 39643326 - 39643213
Alignment:
Q  119 ttataagctactctcaaatttatcacggactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgttt 218  Q
    |||||||  ||||||||||| |||   ||||| |||||||||||||| | ||| |  | ||| ||||||||||||||||| |||   ||||| |||||||    
T  39643326 ttataagtcactctcaaattaatccacgactccattaatatttcaaaatagtcattgtttttgtcaaaagtttttcaattagatttatgtctctatgttt 39643227  T
Q  219 ttgtcacatcacga 232  Q
    ||||||||| ||||    
T  39643226 ttgtcacatgacga 39643213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 1189371 - 1189423
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatt 198  Q
    ||||||||||||||||||||||  | |  |||||| |||||||||||||||||    
T  1189371 gactctattaatatttcaaactaatttatatctttgtcaaaagtttttcaatt 1189423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 281 - 387
Target Start/End: Original strand, 32956494 - 32956600
Alignment:
Q  281 ggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||||| |||||||| ||||||||  |||||||||| || ||||||| |||| ||||||||||||| |||||||||||||   |||||||||||||||    
T  32956494 ggagaatgctaatgagtgcccttgaggcattggttaagctgataaaattcgtaactttgcatcaaaaaatggtgtgattattggcaagacaaaagtaaaa 32956593  T
Q  381 gtttata 387  Q
    |||||||    
T  32956594 gtttata 32956600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 30935240 - 30935354
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaa 245  Q
    |||||||||||||||||||||| ||    |||||| |||||||||||||| || |||| || |||||||||||||||||||| |||||| | |||||| |    
T  30935240 gactctattaatatttcaaactagttcatatctttgtcaaaagtttttcacttagatccttatctttatgtttttgtcacatgacgagggacctaattga 30935339  T
Q  246 aaagtttttgacaaa 260  Q
    |   |||||||||||    
T  30935340 attttttttgacaaa 30935354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 32296444 - 32296393
Alignment:
Q  175 atctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcaca 226  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  32296444 atctttgtcaaaagtttttcaattagatcattgtctctatgtttttgtcaca 32296393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 12427865 - 12427952
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgag 233  Q
    |||||||||||||||| ||| | ||| | ||||||  ||||| ||| ||| || | |||||||||||||||||||||||||| |||||    
T  12427865 gactctattaatattttaaattagtcattatctttgccaaaaatttctcatttaggtcattgtctttatgtttttgtcacatgacgag 12427952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 31245330 - 31245277
Alignment:
Q  323 taaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagt 376  Q
    |||||| |||||||||||||| |||| |||||| |||||| |||||||||||||    
T  31245330 taaaataagtaagtttgcatcgaaaaatggtgtaattattgctaagacaaaagt 31245277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 2256539 - 2256472
Alignment:
Q  307 atattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaa 374  Q
    ||||||||| | || ||||||| |||||||||||||| ||||||||||| || ||| |||||| ||||    
T  2256539 atattggttgaagtattaaaataagtaagtttgcatcgaaaagtggtgtaatcattcctaagaaaaaa 2256472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 10524946 - 10525058
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaa 245  Q
    |||| |||||||||| |||| | ||||  || ||| |||||||||| |||||| ||||  | |||||||||||||||||||| |||||| | |||||| |    
T  10524946 gactttattaatattacaaattagtct--atgtttgtcaaaagtttctcaattagatccctatctttatgtttttgtcacatgacgagggacctaattga 10525043  T
Q  246 aaagtttttgacaaa 260  Q
     ||  ||||||||||    
T  10525044 gaaacttttgacaaa 10525058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 13383768 - 13383830
Alignment:
Q  158 atttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgttttt 220  Q
    |||||||| | ||||| |||||||||||||||||||||||| | || || ||| |||||||||    
T  13383768 atttcaaaatagtctttatctttatcaaaagtttttcaattaggtctttatctctatgttttt 13383830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 21249038 - 21248989
Alignment:
Q  151 tattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttg 200  Q
    ||||||||||| ||| | |||| ||||||| |||||||||||||||||||    
T  21249038 tattaatattttaaattagtctccatctttgtcaaaagtttttcaatttg 21248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 23070321 - 23070264
Alignment:
Q  322 ttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||||| ||||| |||||||| ||||||||||| || ||| |||||| |||||||||    
T  23070321 ttaaaataagtaaatttgcatcgaaaagtggtgtaatcattgctaagaaaaaagtaaa 23070264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 7833643 - 7833571
Alignment:
Q  307 atattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||||||||| ||  |||||| | ||||||||||| ||||| || ||| |||||| |||||| |||||||||    
T  7833643 atattggttaaagtactaaaataaataagtttgcataaaaaaatgatgtaattattgctaagaaaaaagtaaa 7833571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 422
Target Start/End: Original strand, 8793777 - 8793926
Alignment:
Q  280 aggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcat-caaaaagtggtgtgattattactaagacaaaagtaa 378  Q
    |||||||||||||||||| || |||||  | ||||||||||||||||||| ||||||||||||  ||||||| ||||||||||| | ||||||||| |||    
T  8793777 aggagaatgttaatgagtgcctttgaggcaatggttaaggtgttaaaatttgtaagtttgcataaaaaaagtagtgtgattattgccaagacaaaaataa 8793876  T
Q  379 aagtttat------aagacaaaatttctattagtagatttcttaatcaat 422  Q
    ||  ||||      |||||||| |||||||||||||||| ||||| ||||    
T  8793877 aaacttatatttccaagacaaagtttctattagtagattccttaaccaat 8793926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 31915160 - 31915090
Alignment:
Q  309 attggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||||||| || ||||||| |||||||||||||| ||||||||||| |||||| ||| || |||||||||    
T  31915160 attggttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaattatttctatgaaaaaagtaaa 31915090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 19028539 - 19028482
Alignment:
Q  323 taaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||    
T  19028539 taaaataagtaactttgcaacaaaaagttgtgtaattattactaagacaaaagtaaaa 19028482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 6511159 - 6511081
Alignment:
Q  182 tcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaaaaagtttttgacaaa 260  Q
    |||||||||| |||||||| ||  |||||||||||||||||||||| | || ||||||| || | || |||||||||||    
T  6511159 tcaaaagtttctcaatttggtccatgtctttatgtttttgtcacatgatgaagaatctatttgagaaatttttgacaaa 6511081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 35005219 - 35005289
Alignment:
Q  309 attggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||||||| ||  |||||| |||||||||||||| ||||||||||| || ||| |||||| |||||||||    
T  35005219 attggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaatcattgctaagaaaaaagtaaa 35005289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 32502886 - 32502958
Alignment:
Q  188 gtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaaaaagtttttgacaaa 260  Q
    |||| |||||| ||||||||||| |||||||||||||||| |||||  || ||||| ||||  ||||||||||    
T  32502886 gtttctcaattagatcattgtctctatgtttttgtcacatgacgagacatttaattgaaaaaattttgacaaa 32502958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 8033385 - 8033332
Alignment:
Q  309 attggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattatt 362  Q
    ||||||||| || ||||||| ||||| |||||||| ||||||||||| ||||||    
T  8033385 attggttaaagtattaaaataagtaaatttgcatcgaaaagtggtgtaattatt 8033332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 13832214 - 13832271
Alignment:
Q  323 taaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||| ||||| ||||||||||||    ||||||||||| |||||||||||||||||    
T  13832214 taaaataagtaattttgcatcaaaagactgtgtgattattgctaagacaaaagtaaaa 13832271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 17184765 - 17184834
Alignment:
Q  103 aaattggttcatgtctttataagctactctcaaatttatcacggactctattaatatttcaaactcgtct 172  Q
    |||||||||||||||||| ||||||| | ||||| |  || | |||||||||||||||| ||||| ||||    
T  17184765 aaattggttcatgtctttgtaagctattatcaaactagtctctgactctattaatattttaaactagtct 17184834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 18058522 - 18058481
Alignment:
Q  387 aagacaaaatttctattagtagatttcttaatcaatatcttt 428  Q
    |||| ||||||||||||||  |||||||||||||||||||||    
T  18058522 aagataaaatttctattagcggatttcttaatcaatatcttt 18058481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 42009628 - 42009732
Alignment:
Q  283 agaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaagt 382  Q
    ||||||||||||| |  |||||||| ||| ||||| |||||||||||| |||||||| || ||||||| |||| |||||||||||||||||| ||||| |    
T  42009628 agaatgttaatgaatgtccttgagacattagttaaagtgttaaaattaataagtttgaattaaaaagttgtgtaattattactaagacaaaaataaaaat 42009727  T
Q  383 ttata 387  Q
    |||||    
T  42009728 ttata 42009732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 45921882 - 45921765
Alignment:
Q  176 tctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaaaaagtttttgacaaa-ataaggactaattt 274  Q
    ||||| |||||||||| |||||| | |||||||||||||||||||||||||| |||| | | |||||| ||||  |||||||||| | ||  |||| |||    
T  45921882 tctttgtcaaaagtttatcaattaggtcattgtctttatgtttttgtcacatgacgatggacctaattgaaaaaattttgacaaatacaaatactagttt 45921783  T
Q  275 aaaataggagaatgttaa 292  Q
    ||||||||||||||||||    
T  45921782 aaaataggagaatgttaa 45921765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 2392738 - 2392629
Alignment:
Q  271 atttaaaataggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagac 370  Q
    |||||||  ||||||||| ||||||||  ||||  |  ||||||||| ||||||||||| ||||||| |||| ||||||||||||  ||||| | |||||    
T  2392738 atttaaagaaggagaatgctaatgagtgtccttagggaattggttaaagtgttaaaatttgtaagttagcataaaaaagtggtgtagttattgccaagac 2392639  T
Q  371 aaaagtaaaa 380  Q
    ||||||||||    
T  2392638 aaaagtaaaa 2392629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 53924526 - 53924481
Alignment:
Q  182 tcaaaagtttttcaatttgatcattgtctttatgtttttgtcacat 227  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  53924526 tcaaaagtttttcaattagatcattgtctttatgtttttgtcacat 53924481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 32906231 - 32906160
Alignment:
Q  309 attggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||| |||| |||||||||||||||||||||||| ||||| || ||| |||||| ||||||||||| |||||    
T  32906231 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaa 32906160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 47519373 - 47519295
Alignment:
Q  284 gaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattatt 362  Q
    ||||||||||||||   |||| |  ||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||    
T  47519373 gaatgttaatgagtgttcttggggcattggttaaagtgttaaaattagtaagtttgcattaaaaagttgtgtaattatt 47519295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 35422420 - 35422485
Alignment:
Q  312 ggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagta 377  Q
    |||||| |||||||||||||||||||||||| ||||| | |||| ||||||  |||||||||||||    
T  35422420 ggttaaagtgttaaaattagtaagtttgcattaaaaaatagtgtaattattgataagacaaaagta 35422485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 39051375 - 39051298
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtc 223  Q
    |||||||||||||||| ||| | |||    ||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  39051375 gactctattaatattttaaaatagtcactgtctttgtcaaaagtttctcaattagatcattgtctttatgtttttgtc 39051298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 49448187 - 49448271
Alignment:
Q  176 tctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaaaaagtttttgacaaa 260  Q
    ||||| |||||||||| |||||| ||||| ||||||||||||||||||| || |||||  |||||||| | ||  ||||||||||    
T  49448187 tctttgtcaaaagtttctcaattagatcactgtctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaa 49448271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 33395333 - 33395403
Alignment:
Q  309 attggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||||||| || ||||||| ||||||||| |||||||||||||| | |||||| |||||| | |||||||    
T  33395333 attggttaaagtattaaaatgagtaagtttacatcaaaaagtggtataattattgctaagaaataagtaaa 33395403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 37626716 - 37626786
Alignment:
Q  309 attggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||||||| ||  |||||| |||||||||||||| |||||||||||||| |||  ||||| |||||||||    
T  37626716 attggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtgatcattgataagaaaaaagtaaa 37626786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 55264376 - 55264481
Alignment:
Q  92 agtaacccactaaattggttcatgtctttataagctactctcaaatttatcacggactctattaatatttcaaactcgtcttcatctttatcaaaagttt 191  Q
    ||||| |||| |||||||| | ||||||||||||  ||| |||| ||  |||| |||||||||||||||||||| | ||| |  ||||| ||||||||||    
T  55264376 agtaaaccaccaaattggt-cgtgtctttataagtcactttcaatttagtcactgactctattaatatttcaaaatagtcattgtctttgtcaaaagttt 55264474  T
Q  192 ttcaatt 198  Q
    |||||||    
T  55264475 ttcaatt 55264481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 54458704 - 54458756
Alignment:
Q  182 tcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgagg 234  Q
    |||||||||| |||||| |||| ||||||| ||||||||||||||| ||||||    
T  54458704 tcaaaagtttctcaattagatccttgtcttaatgtttttgtcacataacgagg 54458756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 380
Target Start/End: Original strand, 34341380 - 34341491
Alignment:
Q  269 taatttaaaataggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaag 368  Q
    |||||||||||  | ||||| ||| ||||   ||||||| ||||||||| ||  | ||||  ||||||||| || ||||||| |||| |||||| |||||    
T  34341380 taatttaaaatttgggaatgctaacgagtgttcttgagacattggttaaagttctcaaatatgtaagtttgtattaaaaagttgtgtaattattgctaag 34341479  T
Q  369 acaaaagtaaaa 380  Q
    ||||||||||||    
T  34341480 acaaaagtaaaa 34341491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 21865189 - 21865258
Alignment:
Q  310 ttggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||||| || ||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||||||    
T  21865189 ttggttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaa 21865258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 21921050 - 21921119
Alignment:
Q  310 ttggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||||| || ||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||||||    
T  21921050 ttggttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaa 21921119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 38432118 - 38432167
Alignment:
Q  285 aatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaa 334  Q
    ||||||||||| | | |||||| |||||||||| ||||||||||||||||    
T  38432118 aatgttaatgaatgctcttgaggtattggttaaagtgttaaaattagtaa 38432167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 41163052 - 41163108
Alignment:
Q  323 taaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    |||||| ||| ||||| |||| ||||||||||| |||||| |||||| |||||||||    
T  41163052 taaaataagttagtttacatcgaaaagtggtgtaattattgctaagaaaaaagtaaa 41163108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 49448298 - 49448246
Alignment:
Q  151 tattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatc 203  Q
    ||||||||||||||||| |||||  ||||| |||||||||| |||||| ||||    
T  49448298 tattaatatttcaaactagtctttgtctttgtcaaaagtttatcaattagatc 49448246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 380
Target Start/End: Original strand, 53650000 - 53650108
Alignment:
Q  273 ttaaaataggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaa-aagtggtgtgattattactaagaca 371  Q
    |||||| || ||||||||||||||| |  |||  | |||||||||  ||| ||||||||||| |||| || ||| |||| ||||  ||||| ||||||||    
T  53650000 ttaaaaaagaagaatgttaatgagtgcttttggaacattggttaaaatgtcaaaattagtaattttgtataaaagaagttgtgtatttattgctaagaca 53650099  T
Q  372 aaagtaaaa 380  Q
    |||||||||    
T  53650100 aaagtaaaa 53650108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 282 - 387
Target Start/End: Complemental strand, 83679 - 83574
Alignment:
Q  282 gagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaag 381  Q
    |||||||||||||||| || |||   |||| ||| | || ||||||||||||||||||||| ||||||| |||| ||||||  ||||||||||||||||     
T  83679 gagaatgttaatgagtgcctttggagtattcgttgaagtattaaaattagtaagtttgcattaaaaagtagtgtaattattgataagacaaaagtaaaaa 83580  T
Q  382 tttata 387  Q
    ||||||    
T  83579 tttata 83574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 387
Target Start/End: Original strand, 2838968 - 2839075
Alignment:
Q  279 taggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaa 378  Q
    |||||||||| |||||||| || |||    |||||||||| | ||||||||||||||||||||||||||||||||||  ||||| | || ||||||||||    
T  2838968 taggagaatgctaatgagtgcctttggagcattggttaagttcttaaaattagtaagtttgcatcaaaaagtggtgtagttattgc-aaaacaaaagtaa 2839066  T
Q  379 aagtttata 387  Q
    || ||||||    
T  2839067 aaatttata 2839075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 23765853 - 23765894
Alignment:
Q  186 aagtttttcaatttgatcattgtctttatgtttttgtcacat 227  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  23765853 aagtttttcaattaggtcattgtctttatgtttttgtcacat 23765894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 28985580 - 28985482
Alignment:
Q  280 aggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||||| | |||||||| |||||||   |||||||||| | ||||||| |||||||||||||| ||||||| ||| |||||| || |||||||| ||||    
T  28985580 aggagaaggctaatgagtgcccttgatgcattggttaag-tattaaaataagtaagtttgcatc-aaaagtgatgtaattattgctgagacaaaaataaa 28985483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 1407425 - 1407374
Alignment:
Q  323 taaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaa 374  Q
    |||||| |||||||||||||| ||||||| ||| ||||||||||||| ||||    
T  1407425 taaaataagtaagtttgcatcgaaaagtgatgtaattattactaagaaaaaa 1407374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 23131566 - 23131479
Alignment:
Q  300 ccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaagtttata 387  Q
    ||||||| |||||||||| ||  |||||| ||||| ||||||  ||||||| | || |||||| |||| |||||||||||| ||||||    
T  23131566 ccttgagttattggttaaagtactaaaataagtaattttgcaataaaaagttgcgtaattattgctaaaacaaaagtaaaaatttata 23131479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 7592697 - 7592795
Alignment:
Q  282 gagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    ||||||||||| ||||  | |||||| |||| |||| || ||||||| |||||||||  || |||||||| ||| |||||| ||| ||||| |||||||    
T  7592697 gagaatgttaaagagtgtctttgagacattgattaaagtattaaaataagtaagtttaaattaaaaagtgatgtaattattgctaggacaagagtaaaa 7592795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 280
Target Start/End: Complemental strand, 6219845 - 6219668
Alignment:
Q  98 ccactaaattggttcatgtctttataagctactctcaaatttatcacggactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaat 197  Q
    ||||||||||| ||||||||||| ||||| | |||||||| | || |  ||||||||||||||| ||||| |      ||||| |||||||| | |||||    
T  6219845 ccactaaattgcttcatgtctttgtaagccattctcaaatctgtctctaactctattaatattttaaactag------tctttgtcaaaagtatctcaat 6219752  T
Q  198 ttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaaaaagtttttgacaaa-ataaggactaatttaaaata 280  Q
    | | |||  ||||||||||||||||||||| | |||| | |||||| | || ||||||||||| | |  |||||||||||||||    
T  6219751 taggtcaccgtctttatgtttttgtcacataatgagggacctaattgagaaatttttgacaaagacagtgactaatttaaaata 6219668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 4064112 - 4064210
Alignment:
Q  280 aggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaa 378  Q
    |||| |||||||||||||  | || ||||||||||||| || |||||| ||||||||||| || ||||||| |||| ||||||||   |||||||||||    
T  4064112 aggataatgttaatgagtgtctttaagatattggttaaagtattaaaagtagtaagtttgaattaaaaagttgtgtaattattacattgacaaaagtaa 4064210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 7790458 - 7790344
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaa 245  Q
    |||||||||||||||||||| | || |  ||||||||||||||||| |||||| | || ||||| |||| |||||||||||| | |||| |   ||||||    
T  7790458 gactctattaatatttcaaattagtttctatctttatcaaaagtttctcaattaggtctttgtcattatatttttgtcacatgatgagggactaaattaa 7790359  T
Q  246 aaagtttttgacaaa 260  Q
    |||  ||||||||||    
T  7790358 aaaacttttgacaaa 7790344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 845021 - 845101
Alignment:
Q  147 actctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacat 227  Q
    ||||||||||||||||||| | ||| |  ||||| ||||| |||| |||||| |||| |||||| ||||||||||||||||    
T  845021 actctattaatatttcaaaatagtccttgtctttgtcaaatgtttctcaattggatctttgtctctatgtttttgtcacat 845101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 8772515 - 8772445
Alignment:
Q  309 attggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||||||| ||  |||||| ||||| |||||||| ||||||||||| |||||| | ||||||||||||||    
T  8772515 attggttaaagtactaaaataagtaaatttgcatcgaaaagtggtgtaattattgccaagacaaaagtaaa 8772445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 27293312 - 27293393
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacat 227  Q
    |||||||||||||||||||| | ||  | ||||||  ||||||||| |||||| | || |||||||||||||||||| ||||    
T  27293312 gactctattaatatttcaaattagttcttatctttgccaaaagtttctcaattaggtctttgtctttatgtttttgtaacat 27293393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 28504844 - 28504790
Alignment:
Q  191 tttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaa 245  Q
    |||||||| | ||||||||||||||||||| |||||| || ||| ||||||||||    
T  28504844 tttcaattaggtcattgtctttatgtttttatcacatgacaagggatctaattaa 28504790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 38783924 - 38784004
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcaca 226  Q
    |||||||||||||||| ||| | ||| |  ||||| |||||||||| | |||| ||||||||||| | | |||||||||||    
T  38783924 gactctattaatattttaaaatagtcattgtctttgtcaaaagtttcttaattagatcattgtctctgtatttttgtcaca 38784004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 380
Target Start/End: Original strand, 46536619 - 46536719
Alignment:
Q  280 aggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaa 379  Q
    ||||| ||||||  |||| ||||||||| |||| |||| || ||||||| ||||| ||||||  | ||||| ||||  |||||  |||||||||||||||    
T  46536619 aggagtatgttatggagtgcccttgagacattgattaaagtattaaaataagtaattttgcaatacaaagttgtgtagttattgataagacaaaagtaaa 46536718  T
Q  380 a 380  Q
    |    
T  46536719 a 46536719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 10028759 - 10028854
Alignment:
Q  130 tctcaaatttatcacggactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcac 225  Q
    |||||||||  |||| ||||||||||||||||||||   ||||  ||||||  ||||||||| |||||| | ||  ||||||||||||||||||||    
T  10028759 tctcaaattagtcaccgactctattaatatttcaaatcagtctctatctttgccaaaagtttctcaattaggtccatgtctttatgtttttgtcac 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 21136619 - 21136733
Alignment:
Q  146 gactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaa 245  Q
    |||||||||||||||||||| | ||| | |||||| ||||||||||||||||| | ||  | |||||||  ||||||||| | ||||  || |||||| |    
T  21136619 gactctattaatatttcaaaatagtccttatctttgtcaaaagtttttcaattaggtccctttctttatacttttgtcacttgacgaaaaacctaattga 21136718  T
Q  246 aaagtttttgacaaa 260  Q
     || |||||||||||    
T  21136719 gaattttttgacaaa 21136733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 33229631 - 33229553
Alignment:
Q  182 tcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaattaaaaagtttttgacaaa 260  Q
    |||||||||| |||||| ||||  |||||||||||||||||||||| |||||| | |||||| | ||  ||||||||||    
T  33229631 tcaaaagtttctcaattagatccctgtctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaa 33229553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 29374636 - 29374562
Alignment:
Q  300 ccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaa 374  Q
    |||||||| ||||||||| ||  |||||| ||||| ||| |||| ||||||||||| |||||| |||||| ||||    
T  29374636 ccttgagacattggttaaagtagtaaaataagtaaatttacatcgaaaagtggtgtaattattgctaagaaaaaa 29374562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 38730082 - 38730017
Alignment:
Q  314 ttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    ||||| ||||||||||||||||||||| | |||| || |||||||||||  ||||||||||| ||||    
T  38730082 ttaagttgttaaaattagtaagtttgc-ttaaaaggtagtgtgattattgttaagacaaaaggaaaa 38730017  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 41424661 - 41424600
Alignment:
Q  182 tcaaaagtttttcaatttgatcattgtctttatgtttttgtcacatcacgaggaatctaatt 243  Q
    |||||||||| ||||||  ||||||| || ||||||||||||| || ||||||||| |||||    
T  41424661 tcaaaagtttctcaattatatcattgcctctatgtttttgtcatatgacgaggaatttaatt 41424600  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 5846959 - 5846999
Alignment:
Q  185 aaagtttttcaatttgatcattgtctttatgtttttgtcac 225  Q
    |||||||||||||| | ||||||||| ||||||||||||||    
T  5846959 aaagtttttcaattaggtcattgtctctatgtttttgtcac 5846999  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 10028667 - 10028735
Alignment:
Q  130 tctcaaatttatcacggactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatt 198  Q
    |||||||||  |||| |||||||||||||||||||| | ||||| ||| ||  ||||||||| ||||||    
T  10028667 tctcaaattagtcactgactctattaatatttcaaattagtctttatccttgccaaaagtttctcaatt 10028735  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 32029421 - 32029488
Alignment:
Q  130 tctcaaatttatcacggactctattaatatttcaaactcgtcttcatctttatcaaaagtttttcaatt 198  Q
    ||||||||| ||| | |||||| ||||||||||||| | ||||| |||||| | |||||||||||||||    
T  32029421 tctcaaattaatctctgactctgttaatatttcaaaatagtctt-atctttgttaaaagtttttcaatt 32029488  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 379
Target Start/End: Complemental strand, 41168772 - 41168672
Alignment:
Q  280 aggagaatgttaatgagttcccttgagatattggttaaggtgttaaaattagtaagtttgcatcaaaaagtggtgtgatta-ttactaagacaaaagtaa 378  Q
    |||||||||||||  | | |||||  |||||| ||||| ||  |||||| |||||||||||||  ||||||| ||| |||| || |||||||||||||||    
T  41168772 aggagaatgttaaccattgcccttaggatattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattatttgctaagacaaaagtaa 41168673  T
Q  379 a 379  Q
    |    
T  41168672 a 41168672  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 246614 - 246557
Alignment:
Q  323 taaaattagtaagtttgcatcaaaaagtggtgtgattattactaagacaaaagtaaaa 380  Q
    |||||| |||||||||||||| ||||||||||| |||||| || ||| ||||||||||    
T  246614 taaaataagtaagtttgcatcgaaaagtggtgtaattattgctcagaaaaaagtaaaa 246557  T

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Target: scaffold0103 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 28883 - 28845
Alignment:
Q  384 tataagacaaaatttctattagtagatttcttaatcaat 422  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  28883 tataagacaaaatttctatttgtagattccttaatcaat 28845  T

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