View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12947_low_13 (Length: 289)
Name: NF12947_low_13
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12947_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 7815111 - 7815263
Alignment:
| Q |
137 |
taagtctggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttggacttcacttcacgtttcattcg |
236 |
Q |
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| T |
7815111 |
taagtctggagttttgaaacaagctgaaagtataacattaccagatttgatctcaataacaaaggtcaagttatttggacttcacttcacgtttcattcg |
7815210 |
T |
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| Q |
237 |
tgacatcattgaaggctctttctcaagccttagaactagacttcgggctttct |
289 |
Q |
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| T |
7815211 |
tgatgtcattgaaggctctttctcgagccttagaactagacttcgggccttct |
7815263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 7811121 - 7811155
Alignment:
| Q |
9 |
agcagagaaaataaatttccaaaacaaagacttag |
43 |
Q |
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| T |
7811121 |
agcagagaaaataaatttccaaaacaaagacttag |
7811155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 31027675 - 31027601
Alignment:
| Q |
143 |
tggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttggact |
217 |
Q |
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| T |
31027675 |
tggagttttgtaaccagctgaaagaataacattacctgatttgatctcaagaacataggtcaagttatttggact |
31027601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 33801821 - 33801891
Alignment:
| Q |
143 |
tggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttg |
213 |
Q |
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| T |
33801821 |
tggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttg |
33801891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 33806303 - 33806373
Alignment:
| Q |
143 |
tggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttg |
213 |
Q |
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| T |
33806303 |
tggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttg |
33806373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 33812001 - 33811931
Alignment:
| Q |
143 |
tggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttg |
213 |
Q |
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| T |
33812001 |
tggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttg |
33811931 |
T |
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