View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12947_low_14 (Length: 279)
Name: NF12947_low_14
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12947_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 102 - 271
Target Start/End: Complemental strand, 27702391 - 27702225
Alignment:
| Q |
102 |
aaggcaatcaggttttggaagcaaaagaaaagatggcgtatagaagaagacaaggcatatcaagagcttcaacattcaaagaagattttcattcatcatt |
201 |
Q |
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| T |
27702391 |
aaggcaatcaggttttggaagcaaaagaaaagatggcgtatagaagaagacaaggcatatcaagagcttcaacattcaaagaagattttcattcatcatt |
27702292 |
T |
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| Q |
202 |
ggatgatcctaaagattcttctgatcaacaaaatggttattcacgttccctctcttcttctcattcttct |
271 |
Q |
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| T |
27702291 |
ggatgatcctaaaga---ttctgatcaacaaaatagttattcacgttccctctcttcttctcattcttct |
27702225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 27702474 - 27702426
Alignment:
| Q |
19 |
aaagagttggttaggtagaagttgaatgataatcagacacttttgcttg |
67 |
Q |
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| T |
27702474 |
aaagagttggttaggtagaagttgaatgataatcagacacttttgcttg |
27702426 |
T |
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