View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12947_low_15 (Length: 277)

Name: NF12947_low_15
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12947_low_15
NF12947_low_15
[»] chr4 (9 HSPs)
chr4 (3-257)||(37237714-37237962)
chr4 (3-255)||(37253036-37253300)
chr4 (67-259)||(37232863-37233043)
chr4 (3-68)||(37257170-37257235)
chr4 (198-259)||(21187587-21187648)
chr4 (198-259)||(27245502-27245563)
chr4 (166-255)||(37257330-37257419)
chr4 (187-254)||(37242325-37242392)
chr4 (107-155)||(37257256-37257304)
[»] scaffold1652 (1 HSPs)
scaffold1652 (107-164)||(396-453)
[»] chr6 (1 HSPs)
chr6 (19-75)||(14351689-14351745)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 37237714 - 37237962
Alignment:
Q  3 aggaggagcagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggtggagagttggcggcggatgctgaaggagatgga 102  Q
    |||||||| |||||||||||||||||||||||||||||      || |||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  37237714 aggaggagtagagatggatgatggagtaacagcaggag------cgagagagttagaggaagcaggtggagagttgacggcggatgctaaaggagatgga 37237807  T
Q  103 gacgtcttcacaggtacgggaggagatgccgccgatgagtcagtggagggagagatcgcaggtgtggcaacaggagatatggtgggagatgaagatggag 202  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| || |||||||| |||||||| || ||||    
T  37237808 gacgtcttcacaggtacgggaggagatgccaccggtgagtcagcggagggagagatcgcaggtgtggcaacgggtgatatggttggagatgatgaaggag 37237907  T
Q  203 attgagcgaaggtagaactaaccaatagtgtagccacaagcatcaacacaacttt 257  Q
    ||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  37237908 attgagcaatggtggaactaacaaatagtgtagccacaagcatcaacacaacttt 37237962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 255
Target Start/End: Original strand, 37253036 - 37253300
Alignment:
Q  3 aggaggagcagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcagg------------tggagagttggcggcggatgct 90  Q
    ||||||||  || |||||||||||||||| ||||||||| |||||||||||||| || ||||||||            ||||||||||  ||| || | |    
T  37253036 aggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggaggagatggtggagagttgatggctgaaggt 37253135  T
Q  91 gaaggagatggagacgtcttcacaggtacgggaggagatgccgccgatgagtcagtggagggagagatcgcaggtgtggcaacaggagatatggtgggag 190  Q
    |||||||||||||   |||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  37253136 gaaggagatggagcgttcttcacaggtatgggagcagatgccgccggtgagtcagcggagggagagatcgcaggtgtggcaacaggggatatggtgggag 37253235  T
Q  191 atgaagatggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaacacaact 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37253236 atgaagatggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaaaacaact 37253300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 37232863 - 37233043
Alignment:
Q  67 ggtggagagttggcggcggatgctgaaggagatggagacgtcttcacaggtacgggaggagatgccgccgatgagtcagtggagggagagatcgcaggtg 166  Q
    ||||||||||||  ||||||||  ||||||||||||||  ||||||||||| ||||||||||||| |||| ||||| || ||||||||||||||          
T  37232863 ggtggagagttgatggcggatggcgaaggagatggagaattcttcacaggtgcgggaggagatgcagccggtgagtgagcggagggagagatcg------ 37232956  T
Q  167 tggcaacaggagatatggtgggagatgaagatggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaacacaactttgt 259  Q
          |||||||| |||  |||||||| ||||| |||||||||||||| ||||| ||||| | || ||||||||||||||||||||||||||    
T  37232957 ------caggagatttggacggagatgacgatggtgattgagcgaaggtggaactcaccaacaatgcagccacaagcatcaacacaactttgt 37233043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 37257170 - 37257235
Alignment:
Q  3 aggaggagcagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcagg 68  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37257170 aggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcagg 37257235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 21187587 - 21187648
Alignment:
Q  198 tggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaacacaactttgt 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  21187587 tggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaatgcaactttgt 21187648  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 27245502 - 27245563
Alignment:
Q  198 tggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaacacaactttgt 259  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||  |||||||||    
T  27245502 tggagattgagcgaagatagaactaaccaatagtgtagccacaaggatcaatgcaactttgt 27245563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 37257330 - 37257419
Alignment:
Q  166 gtggcaacaggagatatggtgggagatgaagatggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaacacaact 255  Q
    |||||||| || |||||||| |||||||| || ||||||||||| |  || ||||||||||| |||||||||||||||||||| ||||||    
T  37257330 gtggcaacgggtgatatggttggagatgatgaaggagattgagcaatagtggaactaaccaacagtgtagccacaagcatcaatacaact 37257419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 37242325 - 37242392
Alignment:
Q  187 ggagatgaagatggagattgagcgaaggtagaactaaccaatagtgtagccacaagcatcaacacaac 254  Q
    |||||||| ||| ||||| | || ||||||||||||||||||||||  ||||||||||||||||||||    
T  37242325 ggagatgatgatagagatcgtgcaaaggtagaactaaccaatagtgaggccacaagcatcaacacaac 37242392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 37257256 - 37257304
Alignment:
Q  107 tcttcacaggtacgggaggagatgccgccgatgagtcagtggagggaga 155  Q
    |||||||||||||||||||||||||| ||| |||| ||| ||| |||||    
T  37257256 tcttcacaggtacgggaggagatgccaccggtgagacagcggaaggaga 37257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 453 - 396
Alignment:
Q  107 tcttcacaggtacgggaggagatgccgccgatgagtcagtggagggagagatcgcagg 164  Q
    |||||||||||||||||| ||||||| ||| ||||| || ||||||||| ||||||||    
T  453 tcttcacaggtacgggagcagatgccaccgttgagttagcggagggagaaatcgcagg 396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 14351689 - 14351745
Alignment:
Q  19 gatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggtggagag 75  Q
    ||||||||||||||||||||||  |||||||||||  || |||||||| | ||||||    
T  14351689 gatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagcatgaggagag 14351745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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