View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12947_low_17 (Length: 264)
Name: NF12947_low_17
Description: NF12947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12947_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 29519341 - 29519579
Alignment:
| Q |
10 |
gcagagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519341 |
gcagagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattac |
29519440 |
T |
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| Q |
110 |
tagataaggacgacgataaacaagctttgcaatcaacaagtaaatctatgagccttgatttcgtttaagagaattaagcgaataagttcaaataatgcat |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29519441 |
tagataaggacgacgataaacaagctttacaatcaacaagtaaatctatgagccatgatttcgtttaagagaattaagtgaataagttcaaataatgcat |
29519540 |
T |
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| Q |
210 |
ctgagtaaatcatttagttaaccaagaaaatgacataat |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29519541 |
ctgagtaaatcatttagttaaccaagaaaatgacataat |
29519579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 5332715 - 5332477
Alignment:
| Q |
10 |
gcagagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332715 |
gcagagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattac |
5332616 |
T |
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| Q |
110 |
tagataaggacgacgataaacaagctttgcaatcaacaagtaaatctatgagccttgatttcgtttaagagaattaagcgaataagttcaaataatgcat |
209 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5332615 |
tagataaggacggcgataaacaagctttgtaatcaacaagtaaatctatgagccatgatttcgtttaagagaattaagtgaataagttcaaataatgcat |
5332516 |
T |
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| Q |
210 |
ctgagtaaatcatttagttaaccaagaaaatgacataat |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5332515 |
ctgagtaaatcatttagttaaccaagaaaatgacataat |
5332477 |
T |
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